Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPC_3716 |
Symbol | |
ID | 3972339 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB18 |
Kingdom | Bacteria |
Replicon accession | NC_007925 |
Strand | + |
Start bp | 4136008 |
End bp | 4137480 |
Gene Length | 1473 bp |
Protein Length | 490 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 637926826 |
Product | type II secretion system protein E |
Protein accession | YP_533570 |
Protein GI | 90425200 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG4962] Flp pilus assembly protein, ATPase CpaF |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.058843 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGTTTGGGA AGCGTAGCGG AGCAGATAAC GACGGCCGCC TGCCGAAGCC CGCCAGCGCG GCGCCGGAGC CGACGATCGG CGTGTCGTTG CGCGCGCCGC TCGAGGCGCC GGCTGCGGCC GTTGCCTCGC CGCCGCTGGC CCCTGCCCGG CCGACGCCGG CCGCCATCGC GATCGAAACC CGGCGCTCGG ACACCTATTA TCAGGTCAAG GCGACGATCT TCGGGGCGCT GATCGAGGCC ATCGATCTGG CGCAACTCGC CAAGCTCGAT GCCGAATCCG CGCGCGAGGA AATCCGCGAC ATCGTCAACG AGATCATCGC GATCAAGAAC ATCGTGATGT CGATCGCCGA GCAGGAGGAA CTGCTCGACG ACATCTGCAA CGACGTGCTC GGCTACGGCC CGTTGGAGCC GCTGCTGTCG CGCGACGACA TTTCCGACAT CATGGTCAAC GGCGCCGGCA CGGTGTTCAT CGAAGTCGCC GGCCGCATCC AGCGCACCGG CATCCGGTTT CGCGACAACC AGCAGCTACT GAACATCTGC CAGCGCATCG TCAGCCAGGT CGGCCGCCGC GTCGACGAAT CCTCGCCGAT CTGCGACGCC CGGCTCGCCG ACGGCAGCCG CGTCAACGCC ATCGTGCCGC CGTTGGCGAT CGACGGCCCG GCGCTCACCA TCCGCAAATT CAAGAAGGAC AAGCTGACGC TGGATCAGTT GGTCAAATTC GGCGCGATCA CGCCCGAGGG CGCCACCATC CTGCAGATCA TCGGCCGTTG CCGCGCCAAC GTGCTGATCT CCGGCGGCAC CGGCTCCGGC AAGACCACGC TTTTGAACTG CCTGACCAAT TACATCGACG ACGACGAGCG CATCATCACC TGCGAAGACG CCGCCGAACT GCAGCTGCAG CAGCCGCACG TGGTCCGCCT GGAAACCCGG CCGCCGAATA TCGAGGGCGA AGGCCAAGTA ACGATGCGCG AACTGGTGCG CAACTGCCTG CGTATGCGCC CCGAGCGGAT CATCGTCGGC GAAGTCCGCG GACCGGAAGC GTTCGACCTG CTGCAGGCGA TGAACACCGG CCATGACGGC TCTATGGGCA CGCTGCACGC CAACAACCCG CGCGAGGCGC TGTCGCGCTG CGAATCGATG ATCACGATGG GCGGCTTCTC GCTGCCGTCG CGCACCATTC GCGAGATGAT CTGCGCCTCG ATCGACGTGG TGATCCAGGC CGCGCGGTTG CGCGACGGCT CGCGCCGCAT CACCCACATC ACCGAGGTGA TGGGCATGGA AGGCGACACC ATCATCACCC AGGATCTGTT CATCTACGAC ATGATCGGCG AGGACGCCAA CGGCCACATC GTCGGGCGGC ATCGCTCCAC CGGGATCGGC CGGCCGCGTT TCTGGGAGCG CGCGCGCTAT TACGGCGAGG AGAAACGGCT CGCTGCGGCG CTCGACGCCG CCGAAGTCGC CGTCGAAATC TAA
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Protein sequence | MFGKRSGADN DGRLPKPASA APEPTIGVSL RAPLEAPAAA VASPPLAPAR PTPAAIAIET RRSDTYYQVK ATIFGALIEA IDLAQLAKLD AESAREEIRD IVNEIIAIKN IVMSIAEQEE LLDDICNDVL GYGPLEPLLS RDDISDIMVN GAGTVFIEVA GRIQRTGIRF RDNQQLLNIC QRIVSQVGRR VDESSPICDA RLADGSRVNA IVPPLAIDGP ALTIRKFKKD KLTLDQLVKF GAITPEGATI LQIIGRCRAN VLISGGTGSG KTTLLNCLTN YIDDDERIIT CEDAAELQLQ QPHVVRLETR PPNIEGEGQV TMRELVRNCL RMRPERIIVG EVRGPEAFDL LQAMNTGHDG SMGTLHANNP REALSRCESM ITMGGFSLPS RTIREMICAS IDVVIQAARL RDGSRRITHI TEVMGMEGDT IITQDLFIYD MIGEDANGHI VGRHRSTGIG RPRFWERARY YGEEKRLAAA LDAAEVAVEI
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