Gene RPC_3716 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPC_3716 
Symbol 
ID3972339 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB18 
KingdomBacteria 
Replicon accessionNC_007925 
Strand
Start bp4136008 
End bp4137480 
Gene Length1473 bp 
Protein Length490 aa 
Translation table11 
GC content66% 
IMG OID637926826 
Producttype II secretion system protein E 
Protein accessionYP_533570 
Protein GI90425200 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG4962] Flp pilus assembly protein, ATPase CpaF 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.058843 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones24 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGTTTGGGA AGCGTAGCGG AGCAGATAAC GACGGCCGCC TGCCGAAGCC CGCCAGCGCG 
GCGCCGGAGC CGACGATCGG CGTGTCGTTG CGCGCGCCGC TCGAGGCGCC GGCTGCGGCC
GTTGCCTCGC CGCCGCTGGC CCCTGCCCGG CCGACGCCGG CCGCCATCGC GATCGAAACC
CGGCGCTCGG ACACCTATTA TCAGGTCAAG GCGACGATCT TCGGGGCGCT GATCGAGGCC
ATCGATCTGG CGCAACTCGC CAAGCTCGAT GCCGAATCCG CGCGCGAGGA AATCCGCGAC
ATCGTCAACG AGATCATCGC GATCAAGAAC ATCGTGATGT CGATCGCCGA GCAGGAGGAA
CTGCTCGACG ACATCTGCAA CGACGTGCTC GGCTACGGCC CGTTGGAGCC GCTGCTGTCG
CGCGACGACA TTTCCGACAT CATGGTCAAC GGCGCCGGCA CGGTGTTCAT CGAAGTCGCC
GGCCGCATCC AGCGCACCGG CATCCGGTTT CGCGACAACC AGCAGCTACT GAACATCTGC
CAGCGCATCG TCAGCCAGGT CGGCCGCCGC GTCGACGAAT CCTCGCCGAT CTGCGACGCC
CGGCTCGCCG ACGGCAGCCG CGTCAACGCC ATCGTGCCGC CGTTGGCGAT CGACGGCCCG
GCGCTCACCA TCCGCAAATT CAAGAAGGAC AAGCTGACGC TGGATCAGTT GGTCAAATTC
GGCGCGATCA CGCCCGAGGG CGCCACCATC CTGCAGATCA TCGGCCGTTG CCGCGCCAAC
GTGCTGATCT CCGGCGGCAC CGGCTCCGGC AAGACCACGC TTTTGAACTG CCTGACCAAT
TACATCGACG ACGACGAGCG CATCATCACC TGCGAAGACG CCGCCGAACT GCAGCTGCAG
CAGCCGCACG TGGTCCGCCT GGAAACCCGG CCGCCGAATA TCGAGGGCGA AGGCCAAGTA
ACGATGCGCG AACTGGTGCG CAACTGCCTG CGTATGCGCC CCGAGCGGAT CATCGTCGGC
GAAGTCCGCG GACCGGAAGC GTTCGACCTG CTGCAGGCGA TGAACACCGG CCATGACGGC
TCTATGGGCA CGCTGCACGC CAACAACCCG CGCGAGGCGC TGTCGCGCTG CGAATCGATG
ATCACGATGG GCGGCTTCTC GCTGCCGTCG CGCACCATTC GCGAGATGAT CTGCGCCTCG
ATCGACGTGG TGATCCAGGC CGCGCGGTTG CGCGACGGCT CGCGCCGCAT CACCCACATC
ACCGAGGTGA TGGGCATGGA AGGCGACACC ATCATCACCC AGGATCTGTT CATCTACGAC
ATGATCGGCG AGGACGCCAA CGGCCACATC GTCGGGCGGC ATCGCTCCAC CGGGATCGGC
CGGCCGCGTT TCTGGGAGCG CGCGCGCTAT TACGGCGAGG AGAAACGGCT CGCTGCGGCG
CTCGACGCCG CCGAAGTCGC CGTCGAAATC TAA
 
Protein sequence
MFGKRSGADN DGRLPKPASA APEPTIGVSL RAPLEAPAAA VASPPLAPAR PTPAAIAIET 
RRSDTYYQVK ATIFGALIEA IDLAQLAKLD AESAREEIRD IVNEIIAIKN IVMSIAEQEE
LLDDICNDVL GYGPLEPLLS RDDISDIMVN GAGTVFIEVA GRIQRTGIRF RDNQQLLNIC
QRIVSQVGRR VDESSPICDA RLADGSRVNA IVPPLAIDGP ALTIRKFKKD KLTLDQLVKF
GAITPEGATI LQIIGRCRAN VLISGGTGSG KTTLLNCLTN YIDDDERIIT CEDAAELQLQ
QPHVVRLETR PPNIEGEGQV TMRELVRNCL RMRPERIIVG EVRGPEAFDL LQAMNTGHDG
SMGTLHANNP REALSRCESM ITMGGFSLPS RTIREMICAS IDVVIQAARL RDGSRRITHI
TEVMGMEGDT IITQDLFIYD MIGEDANGHI VGRHRSTGIG RPRFWERARY YGEEKRLAAA
LDAAEVAVEI