| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_3678 |
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| Symbol | |
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| ID | 3969615 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB18 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007925 |
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| Strand | + |
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| Start bp | 4094460 |
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| End bp | 4096439 |
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| Gene Length | 1980 bp |
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| Protein Length | 659 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 637926788 |
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| Product | alpha amylase, catalytic region |
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| Protein accession | YP_533532 |
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| Protein GI | 90425162 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0366] Glycosidases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTTATCC TAGATATTGG CATCACCGTG AACAAAACAG CTCAAACCGT CCAAAGCGCC
GCAGTCGGCG GGGCTTTTCA TATCGAAGAG ATTTTTCCGA TCGTCGACGG CGGCCGCTAC
GCGGTCAAGC GCATCGTCGG CGAGCCGATT GCGATCTGGG CCGACGTGTT TCGCGACGGC
CACGAGGTGA TCGCCGCCGC CGTGGTGTGG CGGCGCGAGC AGGATCAGGA CTGGCAACGT
GCGCCGCTGC GCCACGACGT CAATGACCGC TGGGGCGGCG CGTTCGTGCC GGATCGGCCG
GGACGCTACG TCTATGCGAT CGAAGCCTGG ACCGACGAAT TCGCCACCTG GCGCCACGGC
TTCGAATTGA AGCTGGCGGC AGGGCAAGAC GTCACGCTGG ACGCGCTGGA AGGCGCCGCG
ATGCTGACCA AGGCCCGCGC CAGCGGGCCG CATGCCGCCA CCATCCAGCG CTATTGCCAG
GCGTTTCTGG AAACCGGCGA GCCCGAGCCG CTGCTGGCGC CGGACCTGCG CGAGGCGATG
GCCGACAGTC AGGCGCGGCC GGACCTGACC CGGTCGTTGC TGCTGCCGTT GATGATCGAC
CGGCCGCGGG CGCGCTCCGG CGCGTGGTAC GAGATGGTGC CGCGCAGCCA GGGCAGCACG
CCCGGCCAGC ACGGCACCTT CCGCGACTGC ATCACCCGGC TTCCGGACAT CGCCGCGATG
GGGTTCGACG TGCTGTATTT CACGCCGATC CACCCGATCG GCACCACCAA CCGCAAGGGC
CGCAACAATG CGCTGACCGC GCAGCCCGGC GATCCCGGCA GCCCCTATGC GATCGGCGCC
GCGGAAGGCG GCCACGACGC GATCCATCCG GACCTCGGCA CGCTGGCGGA TTTCCGCGCC
TTGCTCGCCG CCGGCAAGCT GGTCGGCATC GAGGTGGCAC TCGACGTCGC CGTGCAGTGC
TCGCCGGACC ACCCCTGGCT GGCGCAGCAT CCGGACTGGT TCAGGCGCCG TCCCGACGGC
AGCATGCGCT ATGCGGAGAA CCCGCCGAAG AAATACGAAG ACATCGTCAA TCCGGATTTC
TCCTGCGAGG ACGCCGGCTC GCTGTGGAAC GCGCTGCGCG ACGTCGTGCT GTTCTGGGTC
GAACAGGGCG TCAAGATCTT CCGCGTCGAC AATCCGCACA CCAAGCCGTT TCCGTTCTGG
GAATGGCTGA TCCACGAGGT GCAGCTCATC GATCCCGAGG TGATCTTCCT GGCCGAAGCG
TTCACCCGGC CGAAGGTGAT GCACGGCCTC GCCAAGCTCG GCTTCACCCA GTCCTACACC
TATTTCACCT GGCGCACCCA GAAGTGGGAG ATCGAGCAGT ATCTCACCGA ACTGACCTCG
TATCCGGTGC ACGACTATTA TCGGCCGAAC TTCTTCGTCA ACACCCCGGA CATCCTGCCC
TATCACCTGC AGAGCGGCGA ACCCTGGATG TTCAAATCGC GGCTGGCGCT GGCGGCGACG
CTGTCCGGCA GCTACGGCAT CTACAACGGC TTCGAATTGG TCGAGCACGA GCCGATCCCC
GGCAAGGAGG AATATCTCAA CTCCGAGAAA TACGAAATCA AAGTGCGCGA TTGGGACCAG
CCCGGCAACA TCAAGCCTTA TATCCGCGAC ATCAACCGCG CGCGTCGCGC CAATGCCGCG
CTGCTGCAGA CCGGCAACCT GCGTTTCGTG TTCATCGAAG ACGCCAATGT GATCGGCTTC
GTCAAACAAT CGGTCGACGG CTCGAATACC GTGGCGGTGG CGATCGCGCT GTCGCGCGAT
TATCACGAAG TCTGGTTTCC GTTGAATGAC GTGCAGATCC AGACCGGGCA CGGTCTGAGC
CCGGTCGCGG CGCTGGAAAA CCTGATCACC GGCGAGCGCG TGCCGTTGGA ATGGGGCGGC
GTCCGGCTGC GGATCGACCC CAACCGCGAC CCCGCCTTGC TGTTTCGCTG CCTAGCCTGA
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| Protein sequence | MVILDIGITV NKTAQTVQSA AVGGAFHIEE IFPIVDGGRY AVKRIVGEPI AIWADVFRDG
HEVIAAAVVW RREQDQDWQR APLRHDVNDR WGGAFVPDRP GRYVYAIEAW TDEFATWRHG
FELKLAAGQD VTLDALEGAA MLTKARASGP HAATIQRYCQ AFLETGEPEP LLAPDLREAM
ADSQARPDLT RSLLLPLMID RPRARSGAWY EMVPRSQGST PGQHGTFRDC ITRLPDIAAM
GFDVLYFTPI HPIGTTNRKG RNNALTAQPG DPGSPYAIGA AEGGHDAIHP DLGTLADFRA
LLAAGKLVGI EVALDVAVQC SPDHPWLAQH PDWFRRRPDG SMRYAENPPK KYEDIVNPDF
SCEDAGSLWN ALRDVVLFWV EQGVKIFRVD NPHTKPFPFW EWLIHEVQLI DPEVIFLAEA
FTRPKVMHGL AKLGFTQSYT YFTWRTQKWE IEQYLTELTS YPVHDYYRPN FFVNTPDILP
YHLQSGEPWM FKSRLALAAT LSGSYGIYNG FELVEHEPIP GKEEYLNSEK YEIKVRDWDQ
PGNIKPYIRD INRARRANAA LLQTGNLRFV FIEDANVIGF VKQSVDGSNT VAVAIALSRD
YHEVWFPLND VQIQTGHGLS PVAALENLIT GERVPLEWGG VRLRIDPNRD PALLFRCLA
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