| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_3658 |
|---|
| Symbol | |
|---|
| ID | 3972030 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB18 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007925 |
|---|
| Strand | - |
|---|
| Start bp | 4074302 |
|---|
| End bp | 4075714 |
|---|
| Gene Length | 1413 bp |
|---|
| Protein Length | 470 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 637926768 |
|---|
| Product | phage integrase |
|---|
| Protein accession | YP_533512 |
|---|
| Protein GI | 90425142 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG4974] Site-specific recombinase XerD |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGGGGGCGG CGTTGGGGGC AAGCATCTTG AAATCTGCGC AAAGGTCGGA AAGAGGTGGT
GGAGACCGCC GTTACCTGAC CCAGCCCAGG GGGGGCGGAA CGACGTGGTA CGTCGTTGCT
GAGGTTCCAA GGACACTCCA GGGCGTTCTG GGCAAAAAGC GGCTCCTGAA GTCGCTCGAA
ACGGACGACC TACGGGTGGC CCGCGTGGCC CGTTGGAACG CCTTGGCCAC TCTGAAGACC
CAGATCGCCG AATGCCGAGC CTCTACCTCG AAGGACGGCG ACCCGCTGCT TCTTGAAGCG
ATGGCCTTCA GGGAGGAATT TGTGCGGGCC GATGCCGCCC GTCGAAACGA ACTAAAGCAC
GAAATCGCGG ACCGCGCCGA GGAGATAGAC CTTGCCGCCG GGGCGCCCCG CGAGGACTAC
GACCCTTTCG ATGAAGGAAC CCCCGCTTCC CGGCAGGCGA CTGACTTTGC GCGGCTGGCC
ACCGGCAAGG CAACTCCGGC CGATATTTAT GTTGATCGTT GGCTATCGTC ATCGACGTAT
GGCGAGCGTA CTAAAGCAGA TGCTCGCATG GCCATCGGGC AGTTCAGGTC TTGGTGCGAG
AAGTCAGATC AGGGCTTCTT CATTGAGAGC ATAACCGACC GCGTCGCATC AAACTTCCGA
GACGATTTCT TCGTCAAGGC CGGGGCGCAT CCCAAGACCG CAAACAAAAA GCTATCTGCG
CTCCGGCAAT ACTGGGAATG GCTAGATCGA AGCTTCGGCG TGCAGCCGAA TCCATGGATG
CGAAAGTCTC TGCCCAAGAC AAGAGCGCAT AGGGTCGCGC CAGACGGCCC CCTCGGCCCC
GAAAGGCCCT TCACTGACGA TGAAATCCGC AAGCTTCTCG TCGGGCCTGC CGACAAGGAC
CTGTCGAACG TAATGCTGAT CGGGGCACTG TCTGGAATGC GTCTGGAGGA GATCGGACAG
CTTCGCGTTG GTGACTGTAA AGATGGCCTA TTCTCGATCA CACGCAGTAA GACCGCTGCC
GGTGTTCGCA CTATTCCCAT TCATTCAGCG CTGGACCCTT TAGTAGAGCA GCTTACAGGA
ACGCGCGACG TAAAGTCCTA CTTATTCCCC GATTTTCCCA ACACCGGTTG GGATGACAAT
CGCACGATGG CGATCTCAAA GCGGTTCGCC TACTACCGTA AGAAGGTGGG CGTTGACGAC
AAGAGACCGG GAGCACGTCG GTCAAAAGTA AACTTTCACA GTTTCCGGCG CTGGTTTGCC
ACCAAGGCTG AGGAGGCTGG CCACAGGGAA AACATTGTGG CCGACATCAT GGGCCATGAA
GGCAACGTTG GAATTACATT TGGTCTCTAT TCAAACGCTC AACTCAAGCA GCTGAAAAAG
GACTGCGTCG AGTCTGTTGA ATTGCCAAAA TGA
|
|---|
| Protein sequence | MGAALGASIL KSAQRSERGG GDRRYLTQPR GGGTTWYVVA EVPRTLQGVL GKKRLLKSLE
TDDLRVARVA RWNALATLKT QIAECRASTS KDGDPLLLEA MAFREEFVRA DAARRNELKH
EIADRAEEID LAAGAPREDY DPFDEGTPAS RQATDFARLA TGKATPADIY VDRWLSSSTY
GERTKADARM AIGQFRSWCE KSDQGFFIES ITDRVASNFR DDFFVKAGAH PKTANKKLSA
LRQYWEWLDR SFGVQPNPWM RKSLPKTRAH RVAPDGPLGP ERPFTDDEIR KLLVGPADKD
LSNVMLIGAL SGMRLEEIGQ LRVGDCKDGL FSITRSKTAA GVRTIPIHSA LDPLVEQLTG
TRDVKSYLFP DFPNTGWDDN RTMAISKRFA YYRKKVGVDD KRPGARRSKV NFHSFRRWFA
TKAEEAGHRE NIVADIMGHE GNVGITFGLY SNAQLKQLKK DCVESVELPK
|
|---|
| |