| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_3620 |
|---|
| Symbol | |
|---|
| ID | 3971647 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB18 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007925 |
|---|
| Strand | + |
|---|
| Start bp | 4023977 |
|---|
| End bp | 4026172 |
|---|
| Gene Length | 2196 bp |
|---|
| Protein Length | 731 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 637926727 |
|---|
| Product | heavy metal translocating P-type ATPase |
|---|
| Protein accession | YP_533474 |
|---|
| Protein GI | 90425104 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG2217] Cation transport ATPase |
|---|
| TIGRFAM ID | [TIGR01494] ATPase, P-type (transporting), HAD superfamily, subfamily IC
[TIGR01525] heavy metal translocating P-type ATPase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.0570735 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGTCGTTC ACGAATTGCC GCGCCGTCTG CGCCTTCGAA CCTCCGCGCA CGCGCTCAAC
GGTGGTGGCG GCCAGCTCGC CGCCGATCTC GGCGCGCTTC CGGGCGTCCG TTCAGTACGG
ATCAATACCC GCGCCCGTTG CGCGGTGGTG AGCTACGACG GGCGCGCCGC AACGCGCGCG
CAAATTCTCG ACGGTCTGAC CTCATGGCAG CCCCGCGACG CTGCGGCGCC GCCGGCCGAG
CATGACGCCG ACGATGCACC ATCGAGCGGC CGCCTCGCGT TGGCCGCTCT GGCTGCGCTC
GGCGCCATCG TTTTGCCGGC GCCGCTGCGG CTGATCCTCA CACTCGCCAG CACCGCGCCG
ACGCTGGCCA AGGGCGGCTG GACGCTGGCG ACGCGCGGCG TCAAGGTGCA GGTGCTCGAC
GCGGTGTCGA TCGGCGTCGC GGTGCTACGC CGAGAGTATT TTACCGCCAG CGCCGCGCAA
TTCCTGATCG AACTCTCGGA GTACATCGAA GCCTCCACGG GGCGGCGCTC CGACGAATTG
ATCGGCAAAT TGCTGCGGCC GAATCCGACA TCGGCAATGG TCGAACGCAA CGGCGTCGTC
GCCGCGATCC CGTTCGCCGA ATTGCTCGCC GGCGACCGCG TCCACGTCAA TGCCGGCGAA
TTGGTGCCGG CGGACGGCAC CGTCGCCGAT GGCGGCGCCA CGGTGAACCA GTCCTCGGTC
ACCGGCGAGA GCCTGCCGAT CCCCAAGGAG GCCGGCGATC CGGTGCTGTC CGGCACGGTA
CTGGAAGAAG GCCGGCTGGT GTTCATCGCC GAACGCGTCG GCGACGCCAC CACCACGGCG
CGGATTTCGC ATTTCATCCG CGAGGCGCTG GCACGGCGCG GCACCACGCA GCGGCTGGCG
GAAACCCTCG CCGACCGCCG GGTCTGGATC AGCCTCGGCT CCGGCGCCGC GGTCTACGCG
CTGACCCGCG ACGCCCGCCG GCTGGAATCC ATGTTCCTGG TCGACTATTC TTGCGCCATC
AAGCTCGGCT CTGCGGTCAC AGTGAAAGCC GCGCTATACG GCTGCGCGCG CCGCGGAATC
CTGGTCAAAG GCGGCGGCGC GCTGGAGACG CTGGCTGACA TCGACACCAT GGTGTTCGAC
AAAACTGGCA CGCTGTCGCA TGGCGAGCTG GAAGTCACCG ATACGCTGAC CTTCGATCCG
CAGCTTTGGC CCCGCGCGCG CTTCCTCGCC ACCATCGCCT CGGTCGAGGA GCACTCCACC
CATCCGGTCG CCAAGGCGGT GGTCAAGCTC GCCCGCGCCG AGGCCATGGC TCATATCGGC
CACGAGGAGG TCGACTTCTT CATCGGCCAT GGCCTCTCCA CCCGAATCGA CGATGGACTG
CTGCGGATCG GCAGCCGGCA CTATCTGGTC GACCATGAGC AGGTGCAGCT GGAGCCTTAC
GACTCCGCGC TGGCCGCATT GGAACAGGAC GGCAAGACGC TGCTGCACGT TGCGCTCGAC
GGCAAACCGC TCGGTGTCAT CGCGCTGCGC GACCGGCCGC GCGACGAAGC CGCGGCAACC
TTACGCAAGC TGCGCGGGCT CGGCATTCGC CGGCTGGTGA TGGTGACCGG CGATCAGCGG
CAGGCGGCGC TACGCGTCGC CAACGGGCTC GACCTCGACG AGGTGATCTA CGAGGCCGAT
CCGGAGCGCA AGGCAGCGGT GCTGCGCGAT CTCAAACAGG GCGGCCACCG CGTCGCCTTT
GTCGGCGACG GCGTCAATGA CGGGCCGGCG CTGATGACCG CCGACATCGG CATCGCGATG
CCGCAGGCCG CCGACATCGC CCGCGCCACC GCCGACGTGG TGCTGCTCGA CGATCGGCTC
GACGCGCTGC CCGACGCAGT CGCCGCGTCG CGCAGCGCGG TGGCGCGGAT CCAGCGCGGC
TTCAAGACCG CGATCGGCGT CAACACCGCG ATCATGGCCG GCGCGTCGTT CGGATGGTTA
CCGCCGGTGC TGTCGTCGTT GCTGCACAAC GGCACCACGA TTGGCATCCT GCTTGATGCC
GTCGCCGCGG CGGATGTCAG ACGCGCTAAT CGAAAGGCTG TCGTGCGGAT CGCGCCGGTC
GGTTGCCCAC CGCCAGTGGC GCAGGCTGAT CGGCGTCGGA CGGGTGAAGG CGCCGACTTT
GGCGATCGAG TGCGGGCGCG AACTGGAAAT CAGTAA
|
|---|
| Protein sequence | MVVHELPRRL RLRTSAHALN GGGGQLAADL GALPGVRSVR INTRARCAVV SYDGRAATRA
QILDGLTSWQ PRDAAAPPAE HDADDAPSSG RLALAALAAL GAIVLPAPLR LILTLASTAP
TLAKGGWTLA TRGVKVQVLD AVSIGVAVLR REYFTASAAQ FLIELSEYIE ASTGRRSDEL
IGKLLRPNPT SAMVERNGVV AAIPFAELLA GDRVHVNAGE LVPADGTVAD GGATVNQSSV
TGESLPIPKE AGDPVLSGTV LEEGRLVFIA ERVGDATTTA RISHFIREAL ARRGTTQRLA
ETLADRRVWI SLGSGAAVYA LTRDARRLES MFLVDYSCAI KLGSAVTVKA ALYGCARRGI
LVKGGGALET LADIDTMVFD KTGTLSHGEL EVTDTLTFDP QLWPRARFLA TIASVEEHST
HPVAKAVVKL ARAEAMAHIG HEEVDFFIGH GLSTRIDDGL LRIGSRHYLV DHEQVQLEPY
DSALAALEQD GKTLLHVALD GKPLGVIALR DRPRDEAAAT LRKLRGLGIR RLVMVTGDQR
QAALRVANGL DLDEVIYEAD PERKAAVLRD LKQGGHRVAF VGDGVNDGPA LMTADIGIAM
PQAADIARAT ADVVLLDDRL DALPDAVAAS RSAVARIQRG FKTAIGVNTA IMAGASFGWL
PPVLSSLLHN GTTIGILLDA VAAADVRRAN RKAVVRIAPV GCPPPVAQAD RRRTGEGADF
GDRVRARTGN Q
|
|---|
| |