| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_3606 |
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| Symbol | |
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| ID | 3971633 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB18 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007925 |
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| Strand | - |
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| Start bp | 4009994 |
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| End bp | 4011937 |
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| Gene Length | 1944 bp |
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| Protein Length | 647 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 637926714 |
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| Product | sigma-54 dependent trancsriptional regulator |
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| Protein accession | YP_533461 |
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| Protein GI | 90425091 |
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| COG category | [K] Transcription
[Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG3284] Transcriptional activator of acetoin/glycerol metabolism |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.833415 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.824204 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGAACAAC GCACGATCCG CATCGCGTGG GAGAAGTTTG TCGCCCATGG CCGGCTGTCC
ACGGGCGTTC CTGCGGCTGT GCTGGCGTCA TGGGCGCGAT CCAAGAGCTT TGGCGTCGGC
GCCGGCGTCG CCGCGGCGCC ACTCGCCGGC GAGCCCGAAT TGTTCCGGCG CCGGACCACC
AGTTCGGACC TGCTCGGCGC GGCCCGCCCA GCGCTGGAGC GATCCGCCCG TCTTCTCGCC
GACGCTGGAT CGATGATGAT CTTGACTGAC GCCAGCGGCT TTATCGTCGA GACCGGGGGG
GATCCGCGGG TGGTCGATGC CGGACGCAGC AACCACCTGG AGCCGGGCGG TCGCTGGGAG
GAGAATGCGA TCGGTACCAA TGCGATCGGC ACCGCGCTCG CCGATGGGCG CCCGACGCTG
ATCCGTGGAT CGGAACATTT CTGCGAAGAC GTTCAGCGTT GGACCTGCGC CGCGGTGCCG
GTGCGACATC CGATCGGCGG CGATCTGCTC GGTGTCGTCG ATATCTCCGG TCCGGCGGGG
ACGTTCAGCG CCCAGGATTT CGCGCTGGCG GCGGCGATCG GCCAGGAAAT CGAAGCTTCC
TTGGGCAGCG CCGCCCGGCA GGAGCACGAG GCACTGCTCA AGCGCTTCTT GTCGAAACGC
TCGATCTGGC TGAGCGAGGA GATCCTGGTC ATCGACCGGC GCGGCGTGCT GGTGCATGCG
ACCGACCCGG CGACGAACAA ACTCGATGCG GCGAACCCGA ATACGCTCGC GCAGGATATT
CGCCAGATGA TCGCGGGGGC TTCGCAGGAC GCCTGGCAGG AGAATTGCCG GCGGCGCTTT
CCGAATGCCC GCCTTGAAAT CGTCAGCAAT GCCGACACCG CCGTTGGTTG CTTGATCGTC
ATGCACCGCA GCCGCCGCGC GGCGCCGGCG CCGGCGGCCG GCAAACCGAG CCAAGAATCC
AATGTGGATT TCGACCAGAT TATTGGCGAC AGCGTCGCCA TGCGGGACGC GCGCAGCCGG
GCCCGCAAGC TGGCGATGAA CGCCTTGCCG ATCCTGGTCG AAGGCGAAAC TGGGGTCGGC
AAGGAGCTGT TCGCTCGCGC CATCAAGGGG GCAGGGCCGG GGGCCGACGG GCCCTTCGTG
CCGCTGAATT GTGGCGGCAT GCCGCGCGAC CTGATCGCGA GCGAGTTGTT CGGATACGTC
AAGGGCGCCT TCACGGGGGC GGACGAGGGC GGCCGGGCCG GCAAGATCGA GCGTGCTGAT
GGCGGCGTGC TTTGCCTTGA TGAAATCGGC GAGATGCCGC TCGATCTGCA ATCCTATCTG
CTTCGGGTGC TGGAAGACGG CATCGTCTAT CGCGTCGGCG ATCATGTCGG CCGCCGGGTC
AACGTCCGGA TCATTTCGAT GACGAACCGC GATCTCACCG CCGAGATCGA GGCCGGCCGA
TTCCGACGCG ATCTCTACTA TCGCATCGCG GCGGCGCGCA TTCTGGTGCC GCCGCTGCGC
GAGCGCGGCG ACGACGTCAT CGCTTTGGCG CAGCGCTTCG CGGCGGCCGC CGCCTTGCGG
TTGCGGCAGC CCGCGCCAAG CTTTTCGCCG GAGCTACTCG CCCGTCTGCA AGCCCATGAT
TGGCCCGGCA ACGTCCGCGA ATTGCGCAAT GTCATCGACG CCATGGTCGC GCTCGCGGAA
TCCGAGCGGC TCGACCTCGC AGACTGGCCG GCGGAGTTTC CACGCGATAC GCGGCTTCGC
GGGCAGGCGG CGGCTGCAAT GAAGCCGACA CAGCCGCCGC GCCCCAGCGA AAGCCTGCAA
TCGGCCGAGC GCGCGGCGAT CCTGGCCCAG GTAGCGGCCT GCAACGGCAA TCTGACCCAA
GCGGCCAAGC GCTTGGGCAT CGCGCGCTCC ACGCTCTATC TGCGGCTGAC TCAGTATCGC
CGCGATGAGT CCTCGACCGA CTGA
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| Protein sequence | MEQRTIRIAW EKFVAHGRLS TGVPAAVLAS WARSKSFGVG AGVAAAPLAG EPELFRRRTT
SSDLLGAARP ALERSARLLA DAGSMMILTD ASGFIVETGG DPRVVDAGRS NHLEPGGRWE
ENAIGTNAIG TALADGRPTL IRGSEHFCED VQRWTCAAVP VRHPIGGDLL GVVDISGPAG
TFSAQDFALA AAIGQEIEAS LGSAARQEHE ALLKRFLSKR SIWLSEEILV IDRRGVLVHA
TDPATNKLDA ANPNTLAQDI RQMIAGASQD AWQENCRRRF PNARLEIVSN ADTAVGCLIV
MHRSRRAAPA PAAGKPSQES NVDFDQIIGD SVAMRDARSR ARKLAMNALP ILVEGETGVG
KELFARAIKG AGPGADGPFV PLNCGGMPRD LIASELFGYV KGAFTGADEG GRAGKIERAD
GGVLCLDEIG EMPLDLQSYL LRVLEDGIVY RVGDHVGRRV NVRIISMTNR DLTAEIEAGR
FRRDLYYRIA AARILVPPLR ERGDDVIALA QRFAAAAALR LRQPAPSFSP ELLARLQAHD
WPGNVRELRN VIDAMVALAE SERLDLADWP AEFPRDTRLR GQAAAAMKPT QPPRPSESLQ
SAERAAILAQ VAACNGNLTQ AAKRLGIARS TLYLRLTQYR RDESSTD
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