| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_3585 |
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| Symbol | |
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| ID | 3972824 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB18 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007925 |
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| Strand | - |
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| Start bp | 3986336 |
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| End bp | 3989488 |
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| Gene Length | 3153 bp |
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| Protein Length | 1050 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 637926695 |
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| Product | hydrophobe/amphiphile efflux-1 HAE1 |
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| Protein accession | YP_533442 |
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| Protein GI | 90425072 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTTTCCG CTATTTTCGT CGATCGACCG CGCTTTGCCA TCGTCATCGC CATCCTGATG
ACGATCGTCG GACTGTTGGC GCTGACCCGC ATCCCGGTCG CCCAGCTTCC CGACATCGTG
CCGCCGCAGG TCCAGGTCAC CACGCTGTAT CCCGGCGCCT CGGCGGAGGT GCTGGAGTCG
ACCGTGGCGC AGCCGCTCGA AGCGCAGATC ATCGGCGTCG ACAAGATGAT CTACATGAAG
TCGTCGAGCG GCAACGACGG CAGCTACACG CTGACGGTCT CGTTCGAACT CGGCAGCAAC
CCCGACATCA ACACGGTCAA CGTCAACAAC CGCGTGCAGA CCTCGCTGTC GCAGTTGCCC
GCCGAGGTGC AGCTGCAGGG CGTCACCGTC AAGAAGAAGT CGTCGTCGAT TCTGCAGGTC
GTGATGCTGT CCAGCGACGG CAAGTACGAT CCACTGTTCA TGACCAACTT CGCCACCATC
AACGTGCTCG ACGAACTGGC GCGGACCCCG GGCGTCGGAT CGGCGTCGCT GTTCGGCCGT
CTGAATTATT CGATGCGGAT CTGGTTCGAC ACCATCCGGC TCACCAGCCT CGGGCTGGTG
CCGTCAGACG TGGTCAAGGC GATCCAGAGC CAGAACATTC AAGCGCCGGT CGGCCGCATC
GGCGCCCGCC CGGTGAGCTC GGATCAGCAG CTTCAGATTA ATGTGCAGAC CCAGGGCCGG
CTGTCCTCGC CCGAGCAGTT CAAGAACGTC GTGATCCGCG CCAATCCGGA CGGCTCGGTG
TTGCGGGTCG GCGACGTCGC CCGGGTCGAG ATGGGGGCGC AGAACGAGGA CGTCGAGGCC
CGCCTCAACA CTTCGCCGTC GGTCGCGATC GGCATCTACC TGGCGCCGGG GGCCAATGCG
CTCAACGCGT CGACCGCGGT CAATGCCACG CTCGACAAAA TCCGCGGCCG GGTTCCGGCG
GGATTGAAGG TTCGGTCGAT CTACGACGCC ACTACCATCG TCAACGAGAC CGTGGATGAG
GTGTTGAAGA CGCTGGTCGA GGCGTTCGTC CTGGTCGCGA TCGTGGTGTT CGTCTTCCTC
GGCAATTTGC GCGCCACCAT CGTGCCGGTG ATCGCGGTGC CGGTCAGCAT CATTGCCTCC
TACGCCGTGC TGCTGGTGCT CGGCTATTCG ATCAATACGA TTTCGCTGCT GGCGCTGGTT
CTCGCCATCG GCATCGTCGT CGACGACGCC ATCGTGGTGG TGGAAAACGT CGAGCGAATC
ATGGAGGAGG AGCCGGAGAT TTCCGCCGCC GACGCCACCA AGAAGGCGAT GCGGCAGGTC
ACCGGGCCGA TCATCGCGAT TACCATGGTG CTGTTCTCGG TGTTCGTGCC GATTGGATTC
ATCCCAGGGA TTTCCGGCGA ATTATTCCGG CAGTTCGCCG TGACGATCAG CGCGGCGATG
TTTGTTTCCG CAATCAACGC GCTGACGCTG TCGCCGGCGC TGTGCGCGGT GTTCCTGAGG
CATTCGCCGC ATCGCGGCGC GCTGGCGCGG ATCGGTCACG GAATCGACAA GGTGCGCAAC
GGCTACGCCT TCGTGGTGCA CAAGTCGCTG CGGATGGCGG CGATCTCGCT GCTTTTGGTC
GGCGGCTGCG CGCTCGGGTC CGGCTTGTTG TCGCGCATCA CTCCGACCGG CTTCCTGCCC
GAGGAAGACC AGGGCGCTTT CTTCATCAAC ATCCAGCTTC CGGAAAGCGC CTCGGTGGAA
CGCACCAGCA GGGCGGTGGC GCAGCTCGAG GATATTCTGG GCAAGATGCC CCAGGTCAAG
GATACCATCG CGGTGGTGGG ATTCTCCATT CTCGACCAAT ACGGCGCGTC CAACAGTGCC
CTGGTGATCG TCACCCTGAA GCCGTTCGAG AATCGCCGAG GCGCGATGGA CTCGGCGCAG
GCGCTGATCG CCAAGACCTT CGGTGCGGCG ACGCAGATCA AGGCCGCGAC CGTCATCCCG
TTCAATCTGC CGCCGGTGAT CGGACTTTCG ACCAGCGGCG GATTCGAAAT ACAGCTCGAG
AATCTTGCGG GCGGCGACTT CGCCACCATG GGCAATGTCA CGCTGGGACT GCTGGCCGCC
GCCAATCAGG ATCCGAAGCT CGCGCGGGTG TTCTCGACCT ACGCGGCGAG TTCGCCGTCG
ATCTATCTCG ATATCGATCG GGAAAAGGCC GAGGCGCTCG GGCTCGGTAT CAACGACATC
TTCACGTCGC TACAGGCGAC GCTCGGCGGC TACTACGTCA ACAACTTCAA TCTCTATGGT
CGGACCTGGC AGGTCAACAT CCAGGCGGAG TCCGAGGACC GACGCGATCT GTCGGCGCTG
TGGAGCATCT ATGTCCGCAA CGCCAAGGGC ACCATGGTCC CCTTGCAAGC GGTGGCCTCG
GTACGGACCG TGGTCGGGCC GGCGGTGATC ACGCGCTACA ACAATTATCG CTCGGTCACC
GTGATGGGAT CCACCGCGCC AGGAGTTTCG TCCGGCGACG CGATGGCGGC GATGGAGAAG
GTCGCAGCCA ATACGCTGCC GTCCGGATAC GCCTTCGAAT GGACCGGGAC CTCTTTCCAG
GAGCAGAAGG TGGGCGGCCA GACCCCGGTG ATTTTGGCGC TTGCGGTGCT GTTCGCCTAC
CTGTTTCTGG TCGCGCTGTA CGAAAGCTGG GTCATTCCGA TCCCGGTGCT GCTGTCGGTC
ACGGTCGGCG TGCTTGGCGC GTTTTTCGGT CTTCTGGTCA GTGGGCTGGC GCTCGATCTC
TATGCCCAGA TCGGGCTGGT GGTGCTGATC GCGATGGCCG CGAAAAACGG CATCCTGATC
GTCGAATTCG CCAAGGAGCA GCGCGAAGCC GGAGCCAGCA TCATCGAGGC GGCCGAGACC
GGGGCGAAGC TGCGGTTTCG CGCGGTGATG ATGACGTCGA TCGCCTTCAT CGCCGGTCTT
GCGCCGCTGG TCTGGGCCGA CGGTGCCGCA AAGATCGCGC GTCGTAGCGT CTCGACGCCG
GTGTTCGCCG GGATGCTGGC GGCGAGCCTG CTCGGCATCT TCGTCATTCC GATGCTCTAC
GTGACCTTTC AGACGCTGCG CGAACGGGCA GCGCGCTTCC GGCGCAAGCC GGGCGAGACC
ACCGCGGTCG CGCCGCATCC GCCCAACCGG TAA
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| Protein sequence | MFSAIFVDRP RFAIVIAILM TIVGLLALTR IPVAQLPDIV PPQVQVTTLY PGASAEVLES
TVAQPLEAQI IGVDKMIYMK SSSGNDGSYT LTVSFELGSN PDINTVNVNN RVQTSLSQLP
AEVQLQGVTV KKKSSSILQV VMLSSDGKYD PLFMTNFATI NVLDELARTP GVGSASLFGR
LNYSMRIWFD TIRLTSLGLV PSDVVKAIQS QNIQAPVGRI GARPVSSDQQ LQINVQTQGR
LSSPEQFKNV VIRANPDGSV LRVGDVARVE MGAQNEDVEA RLNTSPSVAI GIYLAPGANA
LNASTAVNAT LDKIRGRVPA GLKVRSIYDA TTIVNETVDE VLKTLVEAFV LVAIVVFVFL
GNLRATIVPV IAVPVSIIAS YAVLLVLGYS INTISLLALV LAIGIVVDDA IVVVENVERI
MEEEPEISAA DATKKAMRQV TGPIIAITMV LFSVFVPIGF IPGISGELFR QFAVTISAAM
FVSAINALTL SPALCAVFLR HSPHRGALAR IGHGIDKVRN GYAFVVHKSL RMAAISLLLV
GGCALGSGLL SRITPTGFLP EEDQGAFFIN IQLPESASVE RTSRAVAQLE DILGKMPQVK
DTIAVVGFSI LDQYGASNSA LVIVTLKPFE NRRGAMDSAQ ALIAKTFGAA TQIKAATVIP
FNLPPVIGLS TSGGFEIQLE NLAGGDFATM GNVTLGLLAA ANQDPKLARV FSTYAASSPS
IYLDIDREKA EALGLGINDI FTSLQATLGG YYVNNFNLYG RTWQVNIQAE SEDRRDLSAL
WSIYVRNAKG TMVPLQAVAS VRTVVGPAVI TRYNNYRSVT VMGSTAPGVS SGDAMAAMEK
VAANTLPSGY AFEWTGTSFQ EQKVGGQTPV ILALAVLFAY LFLVALYESW VIPIPVLLSV
TVGVLGAFFG LLVSGLALDL YAQIGLVVLI AMAAKNGILI VEFAKEQREA GASIIEAAET
GAKLRFRAVM MTSIAFIAGL APLVWADGAA KIARRSVSTP VFAGMLAASL LGIFVIPMLY
VTFQTLRERA ARFRRKPGET TAVAPHPPNR
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