| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_3553 |
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| Symbol | |
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| ID | 3973753 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB18 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007925 |
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| Strand | - |
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| Start bp | 3950567 |
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| End bp | 3952618 |
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| Gene Length | 2052 bp |
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| Protein Length | 683 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 637926664 |
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| Product | hypothetical protein |
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| Protein accession | YP_533411 |
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| Protein GI | 90425041 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3843] Type IV secretory pathway, VirD2 components (relaxase) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCAAGG ACGACGAGGA TCGCTTCCGG CCGCGGCCCG GCCGGATCCG CTCCGACGCC
CGCAGCGACG CGGCGACCAA GAGCTTCTTC GCCCGGGTTC GCAAGGTCGC CCGTCACCAT
GGCGCGGGGC CGCCCGGCAC ATCCGCGTGT GGAAAGGGCG GCGGCGCGGG CGGCCGAGCG
CGCGACAAGC TCGGTGGGCG GCTGGGCGTC CGTCGCGGCC GGGGGGCTGC CTTCGTTCGC
GCCCGCACCT TGAGTGAACG CGGATGGAGC CACCGTCAGC CGGGCGCCCG GCGCGTCTTG
GTCAAGTCGC GCTCGGTCCG GGCCGCCGGC AAGAACGGAC GTGCGGCCGC TCATTTGCGC
TATATCCAGC GTGACGGCAC CTCGCGCGAT GGCGAACGCG GCCGGCTCTA CTCGGCAACG
CAGGACCGTG CCGACCGCGA TGATTTCCTG GATCGCGGCA AGGACGATCG CCACCAATTT
CGCGTCATCG TCTCGCCGGA GGAAGGCGCC GAGCTCGGCG ACCTGACCGG GTTCACCCGC
GACCTCATGA GTAAGCTCGA AGCTGACCTT GGCACCAAGC TCGATTGGGT CGCGGTGAAC
CACTTCAACA CCGGGCATCC TCATGTCCAC GTCATCATTA ACGGCCGCGA TGAATTGGGC
GAGGATCTGG TCATCAACGG CGACTACATC GCCCATGGCA TTCGCGAGCG GGCAAGCGAG
CTGGTGACCC TTGAACTCGG TCCGGTCACC GAACTCGAAC AGCGCCGCAA GCTCGCCGCG
GAGATTGATC AGGACCGCTT CACCCGCATT GACCGAGCGC TGATCGCCGA GGCCGGCGAG
GGGGCCCTCG ATCTTCGGCA CGCGCCGGCG GATCCGCGCG GCGTTGCCGA TCGGGCGTTG
CGGCTGGCGC GACTGGGCAA GCTGGAGCGA ATGGGGCTCG CCGTCGAGCA GGAGTCCGGC
CGCTGGCAGC TGAGCGGAAG GCTGGAGCCC ACCTTGCGCG AATTGGGCGA GCGCGGCGAC
ATCATCAAGA CCATGCAGCG GGCGTTGCAA GCCAAGGACG TTCAGCGCGA TCCGGCGAGC
TTCCAGATCC ACGATGGTGC ACCCGCGATG CCGATCGTCG GCCGAGTGAT CGACAAGCAC
CTCTCTGACG AACTGGGCGA GAATCTGACC CTGATCATCG ATGGCATCGA CGGCCGCACC
CACCATGTCG CCGGCGTCGA TCCGGCCGGG ATTGAAAACA TCGGCATCGG CAGCATCGTC
GAGGCCGGTT CGGCTGAGGC TGGCCGGCGC CCCGCCGACC GCGCCATTGC CGACATGGCT
GAAGATGGCG TCTATCGGCC GAGCCGCCAT CTGGAGCAGG CGCGGTTCGA CGGCCGCGTT
CCCGGCGGCG ACTATGATGG CTTCATCGAC GCCCATGTCC GCCGGCTCGA GGCGCTGCGG
CGCGCCGGCA TCGTCGAGCG GATCGACGCC GACCATTGGC GGCTTCCGGA CGATTTTGCC
AGCCGGGCTG CGGCCTATGA CGTGGGGCGC AATCGCCAGC TCAACATTCG GGCGCTTTCC
AACTTCGATC TTGAAAGCCA GATCGGAGCT GAGGGCGCGA CCTGGATCGA TCGCCGGCTG
GTCAGTCGCG GACCCGCCGA CCTGGTCGCG GCCGGCTTCG GGCAGGAGGT GCAGCAGGCG
ATGGACCGTC GGCGCGAGCA TCTGATCGGG CAGGGCGACG CCACCCGCCA TGCCGATGGC
CGGATGCTCT ACCGCCGCAA CCTGCTCGCC ACGCTCGAAC AGCGCGAGGT GATCAGCACC
GGCACCGCGC TGGCAGCCTC GCAGTCGCTA CCGTTTCGGG CCGCTGGCGA AGGTGAAACC
GTGCAGGGGG TGTTCAAGCA GACCGTCGAG CTCTCCAGCG GCAAGTTCGC GCTGGTCGAG
AACGCCCATG AATTCACACT GGTGCCCTGG CGACCGGTGA TCGACAACCA TCTGGGCCGC
GAGGTGCTGG GCGTGGTTCA GGGAGGATCG GTGTCCTGGC AGCTCGGCCG GAAGCGGGGG
CTGGGATTGT AA
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| Protein sequence | MSKDDEDRFR PRPGRIRSDA RSDAATKSFF ARVRKVARHH GAGPPGTSAC GKGGGAGGRA
RDKLGGRLGV RRGRGAAFVR ARTLSERGWS HRQPGARRVL VKSRSVRAAG KNGRAAAHLR
YIQRDGTSRD GERGRLYSAT QDRADRDDFL DRGKDDRHQF RVIVSPEEGA ELGDLTGFTR
DLMSKLEADL GTKLDWVAVN HFNTGHPHVH VIINGRDELG EDLVINGDYI AHGIRERASE
LVTLELGPVT ELEQRRKLAA EIDQDRFTRI DRALIAEAGE GALDLRHAPA DPRGVADRAL
RLARLGKLER MGLAVEQESG RWQLSGRLEP TLRELGERGD IIKTMQRALQ AKDVQRDPAS
FQIHDGAPAM PIVGRVIDKH LSDELGENLT LIIDGIDGRT HHVAGVDPAG IENIGIGSIV
EAGSAEAGRR PADRAIADMA EDGVYRPSRH LEQARFDGRV PGGDYDGFID AHVRRLEALR
RAGIVERIDA DHWRLPDDFA SRAAAYDVGR NRQLNIRALS NFDLESQIGA EGATWIDRRL
VSRGPADLVA AGFGQEVQQA MDRRREHLIG QGDATRHADG RMLYRRNLLA TLEQREVIST
GTALAASQSL PFRAAGEGET VQGVFKQTVE LSSGKFALVE NAHEFTLVPW RPVIDNHLGR
EVLGVVQGGS VSWQLGRKRG LGL
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