| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_3548 |
|---|
| Symbol | |
|---|
| ID | 3973955 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB18 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007925 |
|---|
| Strand | - |
|---|
| Start bp | 3946807 |
|---|
| End bp | 3948801 |
|---|
| Gene Length | 1995 bp |
|---|
| Protein Length | 664 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637926659 |
|---|
| Product | conjugal transfer coupling protein TraG |
|---|
| Protein accession | YP_533406 |
|---|
| Protein GI | 90425036 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3505] Type IV secretory pathway, VirD4 components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCGGGAA CACGTATCCT TTGGGGTCAG ATCGCAATCG TCCTCACCGT CGTGCTGACG
ACGACGTGGA CCGCGACGCA ATGGACGGCT TGGCGGCTCG GCTTTCAGCC GCAGCTTGGG
CAACCGTGGT TTGAACTGGC ACCCGGCATG CCGGTCTACT ACCCGCCGGC GTTCTTCTGG
TGGTGGTATG CCTTCGATGC CTATGCGCCT TCGATCTTCG TCGAAGGGGC GTTTATCGCG
GCATCCGGCG GATTCATCGC CATCGCGGTT GCCATCACTC TGTCGATCCT AAGGGCCCGC
GAAGCGAAAA GCGTCGAGAC CTACGGCTCA GCCCGCTGGG CCTCCGAACA GGAAATTCGT
GGCGCGGGAT TGCTCGGCCC CGACGGCGTC ATCCTCGGTT GCCACCGCGA GCACTATTTG
CGTCATGACG GACCGGAACA TGTGCTGTGC TTTGCACCGA CGAGGTCGGG CAAAGGCGTC
GGCCTGGTTG TCCCGACGCT GCTAACCTGG CCCGGCAGCA CGATCGTTCA CGATATCAAG
GGAGAAAATT GGACGCTGAC GGCCGGCTTC CGGTCACGGT TCGGCCGCGT GCTCAAATTC
GATCCCACCG ATGCGCTTTC CGCTGCCTAC AATCCGCTGT TGGAGGTGCG GCGTGGGGAC
AAGGAAGTGC GCGACGTTCA GAATATCGCC GACATCCTGG TCGATCCGGA AGGCGCGCTC
GATCGCCGCA ATCATTGGGA GAAGACCAGC CATAGCCTTC TCGTCGGCGC CATCCTGCAC
GTCCTCTATG CTGAACCGGA CAAGACTCTG GCCGGGGTCG CCAACTTCCT GTCCGACCCA
AAGCGCCCGG TCGAAGCGAC GCTGCGCGCC ATGATGTCGA CGCCGCACCT TGGCGAGAGC
GGTGTTCATC CCGTGGTCGC CTCTGCCGCC CGTGAACTCT TGAACAAGTC GGACAACGAA
CGCTCGGGCG TGCTCTCCAC CGCGATGTCA TTTCTCGGCC TCTACCGCGA TCCCGTGGTG
GCCAAGGTGA CCGAGCGCTG CGATTGGCGG ATCGCCGATC TCATCGCGCA GCGGGCGTCG
CTGAGCCTCT ACCTCGTGGT GCCGCCCTCC GATATCAATC GCACCAAGCC GCTGATCCGG
TTGATCCTCA ACCAGATAGG GCGGCGGCTC ACTGAGGAGT TGAACACCGG CGGTCGTCGG
CATCGCTTGC TGCTGATGCT CGACGAATTT CCCGCACTGG GCCGGTTGGA TTTCTTCGAG
TCAGCGCTGG CCTTCATGGC CGGCTATGGC ATCAAGAGCT TCTTGATCGC GCAATCGCTC
AACCAGATCG AAAAAGCCTA CGGCGCCAAC AATTCCGTGT TGGACAATTG CCACGTCCGG
GTCGCCTTCG CCACCAACGA CGAACGGACC GCGAAACGCG TCTCGGACGC GCTGGGCACC
GCGACTGAAC TGCGCGATTC CACCAATTAT GCGGGCCACC GGCTGGCGCC CTGGCTTGGC
CATCTGATGG TGTCGCGACA GGAGACCGCC CGGCCGCTGT TGACACCCGG CGAGGTGATG
CAGCTTCCAC CCGCCGACGA ATTGCTGCTG GTTTCCGGTG TCCATCCGAT CCGTGCCAGG
AAAACGCGCT ACTACGAGGA TCGCCGCCTG GCGGAGCGCA TCCTGCCGCC GCCGGTCCTC
GGTAAGATTG TTCGGCAAGG CTCCGACATG ACGGCGCACG ATTGGCTCGC GTTGCCGAAA
CTCACCGCCG CGGCCCCGCG TCAGGCCCAA GATCGTCAAC TCGTCGGTGA CCGCGCTAAC
GGTGGCATCA GGCGCGAGCC GGAGTTGCCC CAGCATGAGG AGATCGTACC AAACCAACAA
CCGGCCGATC GCGAATTCGA CGTGCTGGAG GAGGGGGCTG ACATCGACGC GGCGAAGGCG
CGAGCGTTCC GGCAAAGCGT GCGCGTCGTG GCGCGGCAAG CCGCGATGGA CCCCGGCGAT
GGCATCGGGC TGTGA
|
|---|
| Protein sequence | MSGTRILWGQ IAIVLTVVLT TTWTATQWTA WRLGFQPQLG QPWFELAPGM PVYYPPAFFW
WWYAFDAYAP SIFVEGAFIA ASGGFIAIAV AITLSILRAR EAKSVETYGS ARWASEQEIR
GAGLLGPDGV ILGCHREHYL RHDGPEHVLC FAPTRSGKGV GLVVPTLLTW PGSTIVHDIK
GENWTLTAGF RSRFGRVLKF DPTDALSAAY NPLLEVRRGD KEVRDVQNIA DILVDPEGAL
DRRNHWEKTS HSLLVGAILH VLYAEPDKTL AGVANFLSDP KRPVEATLRA MMSTPHLGES
GVHPVVASAA RELLNKSDNE RSGVLSTAMS FLGLYRDPVV AKVTERCDWR IADLIAQRAS
LSLYLVVPPS DINRTKPLIR LILNQIGRRL TEELNTGGRR HRLLLMLDEF PALGRLDFFE
SALAFMAGYG IKSFLIAQSL NQIEKAYGAN NSVLDNCHVR VAFATNDERT AKRVSDALGT
ATELRDSTNY AGHRLAPWLG HLMVSRQETA RPLLTPGEVM QLPPADELLL VSGVHPIRAR
KTRYYEDRRL AERILPPPVL GKIVRQGSDM TAHDWLALPK LTAAAPRQAQ DRQLVGDRAN
GGIRREPELP QHEEIVPNQQ PADREFDVLE EGADIDAAKA RAFRQSVRVV ARQAAMDPGD
GIGL
|
|---|
| |