| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_3538 |
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| Symbol | |
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| ID | 3973945 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB18 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007925 |
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| Strand | - |
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| Start bp | 3930710 |
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| End bp | 3933151 |
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| Gene Length | 2442 bp |
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| Protein Length | 813 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 637926649 |
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| Product | conjugal transfer ATPase TrbE |
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| Protein accession | YP_533396 |
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| Protein GI | 90425026 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3451] Type IV secretory pathway, VirB4 components |
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| TIGRFAM ID | [TIGR00929] type IV secretion/conjugal transfer ATPase, VirB4 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.0252817 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.696341 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATGAATC TTGCTGAGTA TCGTCGATCG ATAACCCATC TGGGGGATTT TCTGCCCTGG
GCCGCCTTGG TCGATGAGGG CATCGTTCTC AATAAGGACG GCTCGTTTCA GCGGACCGCG
CAGTTTCGGG GACCGGATCT GGATTCTGCT GTGCCCGCGG AACTGGCCGC CGTCGCCAGC
CGGCTGAACA ACGCGTTGCG CAGGTTCGGC TCCGGCTGGG CAGTCTTTGT CGAGGCGCAG
CGCTACCCCG CCAACAAATA TCCCGTAAGT CATTTTCCGG ATGTGGCGTC AGCCCTGGTT
GACGTCGAGC GCCGCGCCGA ATTCGAGCGG GAAGGGGCGC ATTACGAATC GGGTTATTTC
CTGACCTTCC TCTATCTGCC GCCGCCCGAA GACACCGCCC GCACCGAGAA ATTCCTCTAC
GAGGGGCGCG ACCGCCGTCA TGACGAGGAT GCTCGGCAAG TACAACGCGG CTTCGTTGAT
CGCACCGACC GGGTGCTCGG GCTTGTCGAG GGCTTTATGC CCGAACTTAA ATGGCTCGAT
GACGAGGAGA CGCTGACCTA CCTGCATTCG ACCGTCTCGA CCAAGCGCCA GCGCGTCCGC
GTCCCCGAGA TCCCGATGTA TCTCGACGCT CTGCTGGCCG ACCAGCCGTT GACCGGCGGC
CTCGAGCCGA TGCTGGGACA GTCCCATCTG CGGGTGCTGA CGGTCGTCGG GTTTCCGACG
GTGACTACCC CCGGCATTCT GGACGAGCTC AACCGGCTCG CATTCGCCTA CCGCTGGGCG
ACCCGCGCCA TCATGCTCGA CAAAACCGAC GCGACCAGGC TGCTGACCAA GATCCGCCGG
CAATGGTTCG CCAAGCGCAA ATCGATCGCC GCGATCCTGA AGGAGGTGAT GACCAACGAA
GCCTCGACGC TCCTAGATAG CGATGCCCAC AACAAGGCCT TGGATGCCGA CGCCGCGTTG
CAGGAACTCG GATCCGACGC GATCGGCCAG GCCTTCGTCA CCGCAACCGT CACGGTGTGG
GACGACGACC CTCGGGTCGC CGATGAGAAG CTCCGCCTGG TGGAGAAGGT GATCCAGGGA
CGCGATTTCA CCTGCATGGT GGAGAGCGTC AACGCGGTCG AAGCTTGGCT CGGATCGCTA
CCCGGCCACG CATATGCCAA CGTCCGACAG CCGCCGGTCT CGACGCTCAA CCTCGCACAC
ATGATCCCGC TGTCCGCGGT CTGGGCCGGC CCTGCGCGAG ACGAGCATTT TGGCGCCCCG
GCATTGTTCT TCGGCAGGAC CGAAGGCGCA ACGCCGTTTC GGTTCTCACT TCACGTCGGC
GACGTCGGCC ATACCCTGGT GGTCGGTCCG ACCGGCGCCG GCAAGTCGGT GTTGCTGGCA
CTGATGGCGC TGCAATTCCG GCGCTATCCG CACAATCAGA TCTTTGCTTT CGACTTTGGC
GGCTCGATCC GCGCTGCGGC GCTGGCGATG GGCGGAGACT GGCACGATCT CGGCGGCGAT
CTGACCGACG GCGCCTCGAG CTCTCTTTCG CTGCAGCCGC TGTCGCGCAT CCCTGATGTC
CCCGAGCGCG CCTGGGCCGC GGATTGGATC GTCAAGATCC TGTCCCGCGA GGGCATCACC
ACCACACCGG AGGTGAAAGA GCATCTCTGG TCGGCGCTGA GCTCGCTGGC GTCCGCGCCG
GACACCGAGC GCACGATGAC CGGCCTGTCT GTGCTGCTGC AGGCGCAGGC GCTGAAGCGG
GCGCTGCAGC CCTATTGCAT TGGCGGGGCG TCAGGTCGGT TGCTTGATGC TGAGACCGAG
CGGCTCGGAG ACGCCCCGGT GCAGGTGTTC GAGACCGAGG GGCTGATCGG CACAGCCGCC
GCGCCCGCGG TTCTCGCCTA TCTGTTCCAT CGCATCGAAC ACCGTCTCGA TGGTCGGCCG
ACGCTGTTGA TCATCGACGA AGGCTGGCTG GCGCTGGATG ACGAGGGCTT TGCCGGCCAG
GTGCGGGAAT GGCTGAAGAC GCTGCGTAAG AAGAACGCCT CCGTGGTCTT CGCCACCCAA
TCATTGTCCG ACATCGACAA TTCGGCGATT GCGCCGGCCA TCATCGAAAG CTGCCCGACG
CGGCTGCTGT TGCCGAACGA GCGCGCGATC GAGCCGCAGA TATCCGCCGT CTATCAGCGC
TTCGGCCTCA ACGACCGGCA GATCGAGATT CTGGCGCGCG CCACGCCGAA GCGCGATTAT
TACTGCCAGT CGCGCCGCGG CAACCGGCTG TTCGAGCTCG GCCTCGGCGC GATCGCTCTG
GCTCTTTGCG CTGCGTCCTC CAAGGCCGAC CAGGCCATGA TCGCGCGCGT GCTCGCCGAG
CATGGGCGCG ACGGCTTCGT GAGCGAATGG CTCCGCCGGC GCGACGCCGG CTGGGCCGTC
GACCTCATTC CCGATCTCCG CAACCTGGAG TTTCCAACAT GA
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| Protein sequence | MMNLAEYRRS ITHLGDFLPW AALVDEGIVL NKDGSFQRTA QFRGPDLDSA VPAELAAVAS
RLNNALRRFG SGWAVFVEAQ RYPANKYPVS HFPDVASALV DVERRAEFER EGAHYESGYF
LTFLYLPPPE DTARTEKFLY EGRDRRHDED ARQVQRGFVD RTDRVLGLVE GFMPELKWLD
DEETLTYLHS TVSTKRQRVR VPEIPMYLDA LLADQPLTGG LEPMLGQSHL RVLTVVGFPT
VTTPGILDEL NRLAFAYRWA TRAIMLDKTD ATRLLTKIRR QWFAKRKSIA AILKEVMTNE
ASTLLDSDAH NKALDADAAL QELGSDAIGQ AFVTATVTVW DDDPRVADEK LRLVEKVIQG
RDFTCMVESV NAVEAWLGSL PGHAYANVRQ PPVSTLNLAH MIPLSAVWAG PARDEHFGAP
ALFFGRTEGA TPFRFSLHVG DVGHTLVVGP TGAGKSVLLA LMALQFRRYP HNQIFAFDFG
GSIRAAALAM GGDWHDLGGD LTDGASSSLS LQPLSRIPDV PERAWAADWI VKILSREGIT
TTPEVKEHLW SALSSLASAP DTERTMTGLS VLLQAQALKR ALQPYCIGGA SGRLLDAETE
RLGDAPVQVF ETEGLIGTAA APAVLAYLFH RIEHRLDGRP TLLIIDEGWL ALDDEGFAGQ
VREWLKTLRK KNASVVFATQ SLSDIDNSAI APAIIESCPT RLLLPNERAI EPQISAVYQR
FGLNDRQIEI LARATPKRDY YCQSRRGNRL FELGLGAIAL ALCAASSKAD QAMIARVLAE
HGRDGFVSEW LRRRDAGWAV DLIPDLRNLE FPT
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