| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_3535 |
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| Symbol | |
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| ID | 3973942 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB18 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007925 |
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| Strand | - |
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| Start bp | 3928294 |
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| End bp | 3929589 |
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| Gene Length | 1296 bp |
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| Protein Length | 431 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637926646 |
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| Product | conjugal transfer protein TrbL |
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| Protein accession | YP_533393 |
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| Protein GI | 90425023 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3846] Type IV secretory pathway, TrbL components |
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| TIGRFAM ID | [TIGR02783] P-type conjugative transfer protein TrbL |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.59426 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGCGGCA CCGGCGTCAT CGATCGATTT CTCGCGGTCT TCACCCAATA TATCGATAGC
GGCTTCGGGC TGCTGCAGCC CGAGGTGGCC TTTGTCGCCA CCACGTTGAT CGCCATCGAT
ATCACGCTGG CGGCGCTGTT CTGGAGCTGG GGCGGCGATA ACGACATCAT CGCGCGGCTG
GTGAAGAAGA CGCTGTTCGT CGGCGTCTTC GCCTATCTGA TCGGCAACTG GAATAAGCTT
GCCCGGATCA TCTTCGAGAG CTTCTCTGGT CTCGGCCTGA AAGCCGCCGG CTCTGGACTT
TCAGCCGCCG ACTTTCTGCG CCCGGGCCGT GTCGCCCAGG TCGGGCTCGA TGCCGGACGG
CCGCTGCTGG AGCAGATCTC CAGCCTGATG GGCTACATCG CCATCTTCGA GAATTTCATC
CAGATCACGG TTTTGCTGCT GGCGTGGGTG ATGGTGCTGC TGGCATTTTT CATCCTGGCG
ATCCAGCTGT TCGTCACCCT GATCGAATTC AAGCTGACGA CGCTGGCGGG CTTCGTGCTG
ATTCCCTTCG GCCTGTTCGG CAAGTCCGCC TTCATGGCCG AGCGCGTGCT CGGCAACGTC
ATCTCGTCTG GCATCAAGGT GCTGGTACTC GCCGTCATCG TCGGCATCGG CTCGACGCTG
TTTTCACAGT TCACGGTGGC CGCAGCCACC CCGCCATCGA TCGACGACGC CATGGCGATG
GTGCTCGCCG CGCTCTCGCT GCTTGGCCTC GGAATTTTCG GTCCCGGCAT TGCCAATGGC
CTCGTCTCCG GTGGTCCGCA GCTTGGCGCT GGCTCCGCTG TCGGCGCGGC CGCAGCGGGT
GGGGGCGTTG TTGCGGCCGG ACTTGCTGGC ACCGCCATGG CAGGCAGCGG ACTGGCCGCG
GCTAGTGGCA TTGCGGCCGG CGCCGCGCGC GGCGGTGCAG CACTGGCCGG CGGCGCCACG
ACAGCGTTTC GTGCGGGAGG GGCGTCGGGA TTGGCAACGA CTGGGCTCAC CAAGGGGGCC
GAGGCCGCGA TCAGCCCACT ACGCCGCGCT GCCGAAAACC TCAAGAGCAG CTTCGAGGCC
GGAGGCCGAG CGGCGGCAGG TGAGGGGAGT TCGGCAGACG CCGGCGGAGC CGCATCATCC
TCTGCGGCTT CATCCGCCGG CGAACCGCCG GCCTGGGCGC GCCGCATGAA GCGCGCGCAA
ACCATCAACC ACGGGACGTC CGCTGCCGCA CACGCTGTTC GCTCCGGCGA TCACGGCGGC
GGCGGAGCCT CTGTCAATCT CTCCGAGGGG GAATAG
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| Protein sequence | MGGTGVIDRF LAVFTQYIDS GFGLLQPEVA FVATTLIAID ITLAALFWSW GGDNDIIARL
VKKTLFVGVF AYLIGNWNKL ARIIFESFSG LGLKAAGSGL SAADFLRPGR VAQVGLDAGR
PLLEQISSLM GYIAIFENFI QITVLLLAWV MVLLAFFILA IQLFVTLIEF KLTTLAGFVL
IPFGLFGKSA FMAERVLGNV ISSGIKVLVL AVIVGIGSTL FSQFTVAAAT PPSIDDAMAM
VLAALSLLGL GIFGPGIANG LVSGGPQLGA GSAVGAAAAG GGVVAAGLAG TAMAGSGLAA
ASGIAAGAAR GGAALAGGAT TAFRAGGASG LATTGLTKGA EAAISPLRRA AENLKSSFEA
GGRAAAGEGS SADAGGAASS SAASSAGEPP AWARRMKRAQ TINHGTSAAA HAVRSGDHGG
GGASVNLSEG E
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