| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_3534 |
|---|
| Symbol | |
|---|
| ID | 3973941 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB18 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007925 |
|---|
| Strand | - |
|---|
| Start bp | 3927607 |
|---|
| End bp | 3928290 |
|---|
| Gene Length | 684 bp |
|---|
| Protein Length | 227 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637926645 |
|---|
| Product | conjugal transfer protein TrbF |
|---|
| Protein accession | YP_533392 |
|---|
| Protein GI | 90425022 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3701] Type IV secretory pathway, TrbF components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.776312 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.529656 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTTCGAA GATCATCGGT CCGCTACGGC CGCACGCCGC AGGCTGTGAC GCCGTATCAG
AAGGCGGCGC AAGTCTGGGA CGAACGCATC GGTTCGGCCC GTGTCCAGGC CAAGAACTGG
CGTCTGATGG CGTTTGGCTC GCTGATGCTG TCGGCGGGTC TGGCGGGCAG TCTGGTCTGG
CTATCCTTGC GCGGCAGCGT CACGCCCTGG GTGGTGCAGG TCGATCGCCT CGGCCAGGCG
CAGGCGGTGG CACCCGCGGC CATCGACTAT CAGCCGTCTG AGGCGCAGAT CGCCTATCAC
CTCGCGCGGT TCATCGAAGA TATCAGGGGA CTGCCGGTCG ATCCGGTCGT GCTGCGCCAA
CAATGGTTGC GCGCCTACGA CTTCACCACG GACCGCGGCG CAGCCGCGCT CAACGATTTC
GCCCGCACCA ATGATCCGTT CGCCAATCTC GGCAAGATGC AGATCTCGGT CGAGGTCTCC
AGCGTCATTC GCGCTTCGCC GAATAGTTTC CGCGTCGCCT GGATCCAGCG CGGCTACGAG
AATGGCTCGC TCGCCACAAC CGAGCGCTGG ACCGCGATCC TGACCGTCGT CGTTCAACCG
CCGCACGACG CCGATCGCCT GCGCAAGAAT CCACTCGGAG TTTACGTCAA CGCCATCAGC
TGGTCGAAGG AGCTTGGACA ATGA
|
|---|
| Protein sequence | MFRRSSVRYG RTPQAVTPYQ KAAQVWDERI GSARVQAKNW RLMAFGSLML SAGLAGSLVW
LSLRGSVTPW VVQVDRLGQA QAVAPAAIDY QPSEAQIAYH LARFIEDIRG LPVDPVVLRQ
QWLRAYDFTT DRGAAALNDF ARTNDPFANL GKMQISVEVS SVIRASPNSF RVAWIQRGYE
NGSLATTERW TAILTVVVQP PHDADRLRKN PLGVYVNAIS WSKELGQ
|
|---|
| |