| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_3533 |
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| Symbol | |
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| ID | 3973940 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB18 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007925 |
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| Strand | - |
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| Start bp | 3926570 |
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| End bp | 3927610 |
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| Gene Length | 1041 bp |
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| Protein Length | 346 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 637926644 |
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| Product | conjugal transfer protein TrbG/VirB9/CagX |
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| Protein accession | YP_533391 |
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| Protein GI | 90425021 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3504] Type IV secretory pathway, VirB9 components |
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| TIGRFAM ID | [TIGR02775] P-type conjugative transfer protein TrbG |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.567814 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAATCGT GTTTCCTGAA CAACATGATG CCCGCTCCGC ACCCGCTCGC CCGGACGTCG
TCAGTGAGGG CCGCTTCGGC GTTGCTGCTG ATGTCCGCTT CGATGCTCGC CGGCTGCTCG
CATCTGCAAA AGCCGCCGGA AATCGCGCTC GATGATCCGG CAGAACCCGC CGTGCTGCTC
GGCGATCCGC CAGCACCGGT GCAGGTGGTA GAACTCGCCA AGCCGCTGCC GCTACCCGGT
CAGTTGAAGC CATTGGGGCG CGGCAAACCC ACGCCCGAGG CGAAGGACCC GGCCGTGCGC
GTCAATCAGG CCAATGCCGC CGCACGGGTC CAGCCGGTAC GCAACGGCTT TATCAACGCC
GTGCAGGTCT ATCCATTCAC CAGCGGCGCG CTCTATCAGG TCTACACCGC GCCTGGCCAA
ATCACCGACG TGATGCTCCA GGCCGGCGAG CAGCTGACCG GCTCCGGGCC CGTCGCTGCC
GGCGACACCG TGCGCTGGAT CATCGGCGAC ACCGAGAGCG AAACCGGCGC CGCCAAAAAG
GTTCACATCC TGATCAAGCC GACGCGCCCC GATCTCGTCA CCAACCTCGT CATCAACACC
GATCGGCGGA CCTATTTCCT TGAACTGCGT TCGACCGAAA AGACCTACAT GGCCTCGGTC
TCCTGGCAGT ACCCTGAAGA TCAGCTCATT GCGCTGCGGC GCCACAACGC GGCCGCGTTG
ACCGCGGCGC CGATCGACGA GGGCATCGAG GTTTCCAAAC TGCGCTTCCG CTATGCCATC
ACCGGCGACA ATCCGCCCTG GCGGCCAATG TCCGCCTTCG ACGACGGCTC AAAAGTCTAT
ATCGAGATGC CACGCGGGAT CGGGCAGGGT GAAGCGCCGC CGCTGTTCGT AATCGGACCT
GAAGGCGACG GCCAACTCGT CAATTATCGC GTCCGGCAAA ACTATTATAT CGTCGACCGG
CTGTTCGGTG CCGCCGAGTT GCGCCTTGGT GGCGACCAGC AGCAGACGGT CCGTATCTCC
CGCACCGACG GGAGGCTTTG A
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| Protein sequence | MKSCFLNNMM PAPHPLARTS SVRAASALLL MSASMLAGCS HLQKPPEIAL DDPAEPAVLL
GDPPAPVQVV ELAKPLPLPG QLKPLGRGKP TPEAKDPAVR VNQANAAARV QPVRNGFINA
VQVYPFTSGA LYQVYTAPGQ ITDVMLQAGE QLTGSGPVAA GDTVRWIIGD TESETGAAKK
VHILIKPTRP DLVTNLVINT DRRTYFLELR STEKTYMASV SWQYPEDQLI ALRRHNAAAL
TAAPIDEGIE VSKLRFRYAI TGDNPPWRPM SAFDDGSKVY IEMPRGIGQG EAPPLFVIGP
EGDGQLVNYR VRQNYYIVDR LFGAAELRLG GDQQQTVRIS RTDGRL
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