| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_3525 |
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| Symbol | |
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| ID | 3973893 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB18 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007925 |
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| Strand | - |
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| Start bp | 3919273 |
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| End bp | 3919956 |
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| Gene Length | 684 bp |
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| Protein Length | 227 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 637926636 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_533383 |
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| Protein GI | 90425013 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.395826 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.08798 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGTTCGCGA GCCGGCTCCT CGGCATCATC ATCACTTTGC AATTGGCGTT AACCACCGTC
TTCCACTTTC TGGGAAAACA GCATGGCGTG CGAGACATTG TGCAGATGCA ACATCGTGCG
GATCTGCAAG CGCTGGCGCT CGAACTCGAG ATCAAGGCGA CGACCGACCC GTTAACTGGA
CTCTTCAACC GCGGGAAGTT TGATGTGGTG CTCGGTTATG AATTGGCTCG AGCGGAACGT
TACGGAAATC CGCTATCGCT AATTGTCTAT GACATTGATC ACTTCAAGGA AGTCAATGAT
GCTTACGGCC ATCAGGCGGG TGATCGGGTT CTGGTCCAAT TGTCCGCGAT TGTTTCGGCC
GCGATCCGCC AGACGGACCT CTTGGTCAGA TGGGGTGGAG AGGAATTCGT CCTCGTGCTG
CCGGATACGG ACGGAGCCAC GGCTCGACTG GTTGCTGAGA AGCTTCGGCA AGCGATCGAG
CAGTCTGGCT TCGACCTTGC AGGGACGATC ACCTGCAGCT TCGGCGTCAG CATCTATGTT
GAAGGCGATT CGGTGGATAG TCTCGTGGCA AGGACCGACA ATGCTCTCTA CCGAGCCAAG
ATGAATGGCC GGAACCGCGT CGAGTATGCT TCCGCAAGAA TGATGTCTCC GAGTATCGCG
CCGTCGCTGG AGCCGAGAGC GTAG
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| Protein sequence | MFASRLLGII ITLQLALTTV FHFLGKQHGV RDIVQMQHRA DLQALALELE IKATTDPLTG
LFNRGKFDVV LGYELARAER YGNPLSLIVY DIDHFKEVND AYGHQAGDRV LVQLSAIVSA
AIRQTDLLVR WGGEEFVLVL PDTDGATARL VAEKLRQAIE QSGFDLAGTI TCSFGVSIYV
EGDSVDSLVA RTDNALYRAK MNGRNRVEYA SARMMSPSIA PSLEPRA
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