Gene RPC_3485 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPC_3485 
Symbol 
ID3972852 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB18 
KingdomBacteria 
Replicon accessionNC_007925 
Strand
Start bp3870693 
End bp3872015 
Gene Length1323 bp 
Protein Length440 aa 
Translation table11 
GC content69% 
IMG OID637926597 
Productbeta-lactamase 
Protein accessionYP_533344 
Protein GI90424974 
COG category[V] Defense mechanisms 
COG ID[COG1680] Beta-lactamase class C and other penicillin binding proteins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.807296 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGTGGGTG GTGGAAACGC CAATCGGGTG CAGATGTCAC GCCGTCGCCG CCGCTTGCAT 
ACTGAAGGGG GACCGACCGT CGGCCTGGCC GTCCTCGCCG CCATTTTGCT GTTGCTCGGC
CTCGGCCACG AGCGCGCCCG CGCGGGACCG GAGCCGCGCT TTTCCGGCAT CACGCAATAT
TTCGACGGCG AGGTCGCGGC CGGCCGGTTG CCCGGCGCGG TGGTACTGAT CCAGCGCCAC
GGGGTGCCGG TCTATCTGCG CTGCTTCGGC GTCCGCGAGG TCGGCAGCGG CGTGGCGATG
ACGCCCGACA CGCTGTTCGC GCTGCATTCG ATGACCAAGC CGATCACCAG CTTCGCCGCG
ATGCTGCTGA TCGACGCCGG CCGCCTCGCG CTCGCCGATC CAGTGGCGAA ATTCATCCCG
GCGTTCGCCG CGGTCGAGGT CGGCGTCGAG ACCGTCGATG CGGCGGGCCA TCCGGTGCTG
CAGCGGGTGC CGCCAAAGCG TCCCGTGACG ATCGCCGATC TGTTGCGCCA CACCTCGGGC
ATCACCTACG GCTATATCGG CGGCGACTTG ATCAAACAGG CCTATGCGGA CGGCCATCTG
TTCGATGGCG CGTTCGACAA CGCCACCTTC GCCGAGCGCA TCGCCCGGCT GCCATTGGCG
CGGCAGCCCG GCACGCTGTG GCGCTACGGC CATTCCACCG ACGTGCTCGG CCGCGTCATC
GAGATCGTCT CCGGGCAGCC GCTCGGCGAG TTCTTGCAGC AGCGGATTTT CGCGCCGCTC
GGCATGACCA GCACCAGCTT CGGGATGAGC GATCCGGCCG ACCGCGCGCG GATGGCGGAG
CCGTTGCCGG GCGACGGCAT CCTGCAACGC TCCGAAGCGA TGCGCCGCGC CCATCCGGAA
TGGCAGTCCG GCGGCGGCGG GCTGGTTTCC ACCGCGCCGG ACTACGCCCG CTTCGCGCAG
ATGCTGCTCG ATGGCGGCGT GTGGGACGGC CGCCGTCTGA TCAGCGAGGC CGCCTTCAAG
GCGATGACCA GCGACCAGAT CGGGCCTGGC TCCGGCGTGG CGCGCGACTT CTTCTATTTC
CCCGGCGATG GCTTCGGCTT CGGCTACGGC CTCGCGGTCC GGGTCGAGCC CGGCACCGCG
CGGCCGCCGC CGCCGGGCTC GCTCGGCGAA TTGAAATGGG ACAGCGGCAG CGGCACCTTG
TTCGGCGTCG ACCCCAAGCT CGACATGGTG TTCGTCTTGA TGCAGCAGAC CCAGGCCGAA
CGCGGCAAGA ACACCGTGGC GTTCAAGAAG CTGCTGTATG ACGCGGTGCT GGCGCAGCCG
TAA
 
Protein sequence
MVGGGNANRV QMSRRRRRLH TEGGPTVGLA VLAAILLLLG LGHERARAGP EPRFSGITQY 
FDGEVAAGRL PGAVVLIQRH GVPVYLRCFG VREVGSGVAM TPDTLFALHS MTKPITSFAA
MLLIDAGRLA LADPVAKFIP AFAAVEVGVE TVDAAGHPVL QRVPPKRPVT IADLLRHTSG
ITYGYIGGDL IKQAYADGHL FDGAFDNATF AERIARLPLA RQPGTLWRYG HSTDVLGRVI
EIVSGQPLGE FLQQRIFAPL GMTSTSFGMS DPADRARMAE PLPGDGILQR SEAMRRAHPE
WQSGGGGLVS TAPDYARFAQ MLLDGGVWDG RRLISEAAFK AMTSDQIGPG SGVARDFFYF
PGDGFGFGYG LAVRVEPGTA RPPPPGSLGE LKWDSGSGTL FGVDPKLDMV FVLMQQTQAE
RGKNTVAFKK LLYDAVLAQP