| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_3458 |
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| Symbol | rpoB |
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| ID | 3972126 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB18 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007925 |
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| Strand | - |
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| Start bp | 3840401 |
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| End bp | 3844522 |
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| Gene Length | 4122 bp |
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| Protein Length | 1373 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637926569 |
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| Product | DNA-directed RNA polymerase subunit beta |
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| Protein accession | YP_533317 |
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| Protein GI | 90424947 |
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| COG category | [K] Transcription |
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| COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
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| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type
[TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGCAGC AGACGTTCAC CGGTCGCAAA CGGGTTCGCA AGTTCTTCGG TCACATTCGG
GAAGTCGCCG AAATGCCGAA CCTCATCGAG GTTCAGAAGG CATCTTATGA CCAATTCCTG
ATGGTCGACG AACCAGTCGG CGGGCGGCTG GACGAGGGCC TGCAGGCGGT CTTCCGTTCG
GTGTTTCCGA TCTCGGATTT CTCCAATACC TCGATGTTGG AATTCGTCCG CTACGAATTC
GAACCGCCGA AATACGATGT CGACGAGTGC CGCCAGCGCG GCATGACCTA TGCTGCGCCG
CTGAAGGTGA CGCTGCGCCT CATCGTGTTC GATATCGACG AAGAAACCGG CGCCCGCTCG
GTCAAGGACA TCAAGGAGCA GGACGTCTAC ATGGGCGATA TCCCGCTCAT GACCATGAAC
GGCACCTTCG TCGTCAACGG CACCGAGCGC GTCATCGTCT CGCAGATGCA CCGTTCGCCG
GGCGTGTTCT TCGACCACGA CAAGGGCAAG ACCCATTCGT CGGGCAAGCT GCTGTTCGCC
GCCCGCGTGA TTCCGTATCG CGGCTCCTGG CTCGACATCG AGTTCGACGC CAAGGACATC
GTGTTCGCGC GCATCGATCG TCGCCGCAAG ATTCCGGTGA CTTCGCTGAT GTTCGCGCTG
GGTCTCGACG GCGAGGAGAT CCTCAGCACG TTCTACAAGA AGATCCAGTA CAAGAAGATC
AAGGAAGGCT GGCGCGTTCC GTTCGATTCC AACCGCTTCC GCGGTTATTC GACCATCAAC
GACCTGATCG ACGCCGACAC CGGCAAGGTG GTGCTTGAGG CCGGCAAGAA GCTGACCGTG
CGCGCCGCCC GCCAGCTGCA GGAAAAGGGC CTCAAGGCAC TGCGTCTGAG CGATGAGGAA
TTGGTCGGCA ACTATCTCGC CGAAGACCTG GTCAACCCGA AGACCGGCGA AATCTACGCC
GAGGCCGGCG AGGAAATCAC CGAGAAGTCG CTGAAGGGCC TGAACGAGCA GGGCTACAAG
GAACTGCCGC TGCTCGACAT CGACCACGTC AACATCGGCG CCTACATCCG CAACACGCTG
GCCGCCGACA AGAACATGAC GCGTGAAGAC GCGCTGTTCG ACATCTACCG GGTGATGCGT
CCGGGCGAGC CGCCGACCAT CGATTCGGCG CAGAACATGT TCCAGTCGCT GTTCTTCGAC
AGTGAGCGCT ACGACCTGTC CGCGGTCGGC CGCGTCAAGA TGAACATGCG CCTCGAGCTG
GATGCGCCCG ACACCCATCG CACGCTGCGC AAGGAAGACA TCCTCGCCGT CATCAAGACC
CTGGTGGGTC TGCGCGACGG CCGCGGCGAA ATCGACGACA TCGACCATCT CGGCAACCGC
CGGGTGCGCT CGGTCGGCGA ATTGATGGAG AACCAGTACC GCATCGGCCT GCTGCGCATG
GAGCGCGCGA TCAAGGAGCG GATGTCCAGT GTCGATATCG ACACCGTGAT GCCGCAGGAC
CTGATCAACG CCAAGCCGGC GGCCGCCGCG GTGCGCGAAT TCTTCGGCTC CTCGCAGCTG
TCGCAGTTCA TGGACCAGAC CAACCCGCTG TCGGAAATCA CCCACAAGCG CCGCCTCTCG
GCGCTCGGCC CGGGCGGTCT GACCCGCGAG CGCGCCGGCT TCGAAGTCCG CGACGTGCAT
CCGACGCATT ACGGCCGGAT CTGCCCGATC GAGACGCCGG AAGGTCCGAA CATCGGCCTG
ATCAACTCGC TGGCGACCTT CGCCCGCGTC AACAAATACG GCTTCGTCGA GACGCCCTAT
CGCCGCTGCA AGGACGGCCG CGTCACCGAC GAGGTGGTGT ATCTGTCGGC GATGGAAGAG
GGCCGCTACT CGGTGGCGCA GGCCAACGTG CAGCTCGATC CCAAGGGCCG CTTCGTCGAA
GACCTGATCG TCTGCCGCGA CGGCGGCACC CGCGACGTGG TGCTGATCCC GGCCGACAAG
GTCGACTTCA TGGACGTGTC GCCGAAGCAG CTGGTTTCGG TCGCCGCGGC CTTGATCCCG
TTCCTCGAGA ACGACGACGC CAACCGCGCG CTGATGGGCT CCAACATGCA GCGTCAGGCC
GTGCCGTTGG TGCGCGCCGA AGCGCCGTTC GTCGGCACCG GCATGGAAGG CGTGGTTGCG
CGTGACTCTG GCGCTGCGAT CGCCGCACGC CGCACCGGCG TGATCGACCA GATCGACGCC
ACCCGTATTG TTATCCGCGC CACCGACGAT CTCGACCCGA CCAAGTCCGG CGTCGATATC
TACCGGCTGA TGAAGTACCA GCGCTCCAAC CAGTCGACCT GCATCAACCA GCGTCCGCTG
GTGAAGGTCG GCGACATGGT GGCGAAGGGC GACATCATCG CCGACGGTCC GTCGACCGAT
CTCGGCGAGT TGGCGCTCGG CCGCAACGTG CTGGTCGCGT TCATGCCGTG GAATGGCTAC
AACTTCGAAG ACTCGATCCT GCTGTCGGAG CGGATCGTCA AGGACGACGT CTTCACCTCG
ATCCACATCG AGGAATTCGA AGTCATGGCC CGCGACACCA AGCTCGGCCC CGAGGAAATC
ACCCGCGACA TTCCGAACGT CTCGGAAGAA GCGCTGAAGA ACCTCGACGA AGCCGGCATC
GTCTACATCG GCGCGGAAGT GCGCGCCGGC GACATCCTGG TCGGCAAGAT CACGCCGAAG
GGCGAAAGCC CGATGACGCC GGAAGAAAAG CTGTTGCGCG CGATCTTCGG CGAAAAGGCC
TCCGACGTCC GCGACACCTC GCTGCGCGTG CCTCCGGGCG TGCAGGGCAC CATCGTCGAA
GTCCGCGTCT TCAACCGGCA CGGCGTCGAC AAGGACGAGC GCGCTCTGGC GATCGAACGG
GAAGAGATCG AACGGCTCGC CAAGGACCGC GACGACGAAC AGGCTATTCT CGACCGTAAC
GTTTACGGCC GTCTCGCCGA CCTGCTGGAA AACCGTCAGG GCATCGCCGG CCCCAAGGGC
TTCAAGAAGG ACACCAAGAT CACCCGCGCG GTGATCGAGG AGTATCCGAA GTCGCAGTGG
TGGTTGTTCG CCTCGCCGAA CGACAAGCTG ATGGCCGAAA TCGAAGCCAT GCGGAAGCAG
TACGACGAGT CGAAGAAGGG CCTTGAACAG CGCTTCCTCG ACAAGGTCGA AAAGCTGCAG
CGCGGCGACG AATTGCCGCC CGGCGTGATG AAGATGGTCA AGGTCTTCGT CGCGGTGAAG
CGCAAGATCC AGCCGGGCGA CAAGATGGCC GGCCGCCACG GCAACAAGGG CGTGGTGTCG
AAGATCGTGC CGATCGAAGA CATGCCGTTC CTGGAAGACG GCACCCACGC CGACATCGTG
CTCAACCCGC TCGGCGTGCC GAGCCGGATG AACGTCGGTC AGATCTTGGA GACCCATCTC
GGTTGGGCCT GCGCCGGCCT CGGCAAGCGC ATCGGCCAGA CCATCGACGC CTACTATCAG
AAGCAGGATC TCAAGCCGAT GCGCGAGACG CTGCGGAAGA TCTACGGCGA AGATGAAACC
ATCAAGTCGC TGAACGACGC CGAGTTGCTC GAGCTCGCCC GCAATCTGAA GCCTGGTGTC
CCGATCGCCA CTCCGGTGTT CGACGGCGCC AAGGAAGCCG ATATCGAGGA GATGCTGAAG
CTCGCCGGTC TCGATGCCTC CGGACAATCG ACCGTCTATG ACGGCCGCAC CGGCGACACC
TTCGACCGCA AGGTGACGGT TGGGTACATC TACATGCTCA AGCTGCACCA TCTCGTCGAC
GACAAGATCC ATGCCCGTTC GATCGGCCCG TACTCGCTGG TCACCCAGCA GCCGCTCGGC
GGCAAGGCGC AGTTCGGCGG ACAGCGGTTC GGTGAAATGG AAGTGTGGGC GCTCGAGGCT
TACGGCGCGG CGTACACGCT CCAGGAAATG CTGACCGTGA AATCGGACGA CGTCGCCGGC
CGTACCAAGG TGTACGAGGC GATCGTGCGC GGCGACGACA CCTTCGAAGC CGGCATCCCG
GAATCGTTCA ACGTGCTGGT CAAGGAAATG CGCTCGCTCG GCCTCAACGT CGATCTGCAC
AATTCCAAGC TGGCGACGCC GACCTCCGAG GCGGCCGAGT GA
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| Protein sequence | MAQQTFTGRK RVRKFFGHIR EVAEMPNLIE VQKASYDQFL MVDEPVGGRL DEGLQAVFRS
VFPISDFSNT SMLEFVRYEF EPPKYDVDEC RQRGMTYAAP LKVTLRLIVF DIDEETGARS
VKDIKEQDVY MGDIPLMTMN GTFVVNGTER VIVSQMHRSP GVFFDHDKGK THSSGKLLFA
ARVIPYRGSW LDIEFDAKDI VFARIDRRRK IPVTSLMFAL GLDGEEILST FYKKIQYKKI
KEGWRVPFDS NRFRGYSTIN DLIDADTGKV VLEAGKKLTV RAARQLQEKG LKALRLSDEE
LVGNYLAEDL VNPKTGEIYA EAGEEITEKS LKGLNEQGYK ELPLLDIDHV NIGAYIRNTL
AADKNMTRED ALFDIYRVMR PGEPPTIDSA QNMFQSLFFD SERYDLSAVG RVKMNMRLEL
DAPDTHRTLR KEDILAVIKT LVGLRDGRGE IDDIDHLGNR RVRSVGELME NQYRIGLLRM
ERAIKERMSS VDIDTVMPQD LINAKPAAAA VREFFGSSQL SQFMDQTNPL SEITHKRRLS
ALGPGGLTRE RAGFEVRDVH PTHYGRICPI ETPEGPNIGL INSLATFARV NKYGFVETPY
RRCKDGRVTD EVVYLSAMEE GRYSVAQANV QLDPKGRFVE DLIVCRDGGT RDVVLIPADK
VDFMDVSPKQ LVSVAAALIP FLENDDANRA LMGSNMQRQA VPLVRAEAPF VGTGMEGVVA
RDSGAAIAAR RTGVIDQIDA TRIVIRATDD LDPTKSGVDI YRLMKYQRSN QSTCINQRPL
VKVGDMVAKG DIIADGPSTD LGELALGRNV LVAFMPWNGY NFEDSILLSE RIVKDDVFTS
IHIEEFEVMA RDTKLGPEEI TRDIPNVSEE ALKNLDEAGI VYIGAEVRAG DILVGKITPK
GESPMTPEEK LLRAIFGEKA SDVRDTSLRV PPGVQGTIVE VRVFNRHGVD KDERALAIER
EEIERLAKDR DDEQAILDRN VYGRLADLLE NRQGIAGPKG FKKDTKITRA VIEEYPKSQW
WLFASPNDKL MAEIEAMRKQ YDESKKGLEQ RFLDKVEKLQ RGDELPPGVM KMVKVFVAVK
RKIQPGDKMA GRHGNKGVVS KIVPIEDMPF LEDGTHADIV LNPLGVPSRM NVGQILETHL
GWACAGLGKR IGQTIDAYYQ KQDLKPMRET LRKIYGEDET IKSLNDAELL ELARNLKPGV
PIATPVFDGA KEADIEEMLK LAGLDASGQS TVYDGRTGDT FDRKVTVGYI YMLKLHHLVD
DKIHARSIGP YSLVTQQPLG GKAQFGGQRF GEMEVWALEA YGAAYTLQEM LTVKSDDVAG
RTKVYEAIVR GDDTFEAGIP ESFNVLVKEM RSLGLNVDLH NSKLATPTSE AAE
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