| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_3457 |
|---|
| Symbol | |
|---|
| ID | 3972125 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB18 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007925 |
|---|
| Strand | - |
|---|
| Start bp | 3836056 |
|---|
| End bp | 3840261 |
|---|
| Gene Length | 4206 bp |
|---|
| Protein Length | 1401 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637926568 |
|---|
| Product | DNA-directed RNA polymerase subunit beta' |
|---|
| Protein accession | YP_533316 |
|---|
| Protein GI | 90424946 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
|---|
| TIGRFAM ID | [TIGR02386] DNA-directed RNA polymerase, beta' subunit, predominant form |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.416565 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACCAAG AAATTATGAA TCTGTTTAAT CCGACGACGC CGGCTCAGGT CTTCGACCAG
ATCCGCATTT CGATCGCGTC GCCGGAAAAG ATTCTGTCGT GGTCCTACGG CGAGATCAAG
AAGCCGGAAA CCATCAATTA CCGCACCTTC AAGCCGGAGC GCGACGGGCT GTTCTGCGCC
CGCATTTTCG GGCCGATCAA GGATTACGAG TGCTTGTGCG GCAAGTACAA GCGGATGAAG
TACAAGGGCA TCATCTGCGA GAAGTGCTCG GTCGAAGTGA CGTTGTCCCG CGTCCGTCGC
GAGCGCATGG GCCACATCGA GCTCGCCGCC CCGGTCGCCC ACATCTGGTT CCTGAAATCC
TTGCCGTCGC GGATCGGGCT TCTGCTCGAC ATGACGCTGA AGGATCTCGA ACGGATTCTG
TATTTCGAAT ATTACGTCGT CCTCGAGCCG GGTCTGACCG CGCTGAAGGA TCGGCAACTG
CTGTCCGAAG AAGAGTATCT GCGCGCGCAG GACGAATACG GCCAGGATTC CTTCACCGCC
ATGATCGGCG CCGAAGCGAT CCGCGAGCTG TTGAAGGGCT TGGAGCTGGA GAAGCTCGAG
GCCTCGCTGC GCGTCGAGAT GCAGGAAACC GAATCCGACA TCAAGCACAA GAAGCTCGCC
AAGCGCTTGA AGATCGTCGA GGCGTTCCGC TTCTCCGGCA ACAAGCCGGA ATGGATGATC
CTGACCGTGG TGCCGGTGAT TCCGCCGGAC CTGCGCCCCT TGGTGCCGCT CGACGGCGGC
CGCTTTGCGA CCTCCGATCT GAATGATCTC TATCGCCGCG TCATCAACCG TAACAACCGC
TTGAAGCGGC TGATGGAGCT GCGCGCGCCG GACATCATCA TCCGCAACGA AAAGCGCATG
CTGCAGGAGG CCGTCGACGC ACTGTTCGAC AACGGTCGCC GCGGCCGCGT CATCACCGGC
GCCAACAAGC GTCCGCTGAA GTCGCTCGCC GACATGCTGA AGGGCAAGCA GGGTCGGTTC
CGGCAGAACC TGCTCGGCAA GCGCGTCGAC TATTCCGGCC GTTCGGTGAT CACCGTGGGT
CCGGAACTGC GGCTGCATCA GTGCGGCCTG CCGAAGAAGA TGGCGCTCGA ACTGTTCAAG
CCGTTCATCT ATTCGCGGCT CGACGCCAAG GGGCTGTCGA CCACGGTCAA GCAGGCCAAG
AAGCTCGTGG AAAAAGAGCG TCCCGAGGTT TGGGACATCC TCGACGAGGT GATCCGCGAA
CACCCGATCC TGTTGAACCG CGCGCCGACG CTGCATCGGC TCGGCATTCA GGCGTTCGAG
CCGGTGTTGA TCGAGGGCAA GGCGATCCAG CTTCACCCGC TGGTTTGCGC CGCGTTCAAC
GCCGACTTCG ACGGCGACCA GATGGCGGTG CACGTGCCGC TGTCGCTGGA AGCCCAGCTC
GAAGCCCGCG TCTTGATGAT GTCGACCAAC AACATCCTGC ATCCGGCCAA TGGTCTGCCG
ATCATCGTGC CGTCGCAGGA CATCGTGCTC GGCCTGTACT ACCTGTCGAT CCTGCGTGAA
GGATTGCCGG GCGAGGGCAA GCTGTTCGGC GAGGCCGCCG AGATCGAGCA CGCGCTGCAC
GCCAAGGTCA TCCACCTGCA CACCAAGATC AAGTATCGCT GGGAAGGCCT CGACGAGAAT
GGCAAGCAGG TCAGCCGCTG GTACGAGACC ACGGCCGGAC GCACCATGCT CGGCCAGGTG
CTGCCGAAGT CGGTGAAGAT GCCGTTCGAC GTCATCAACA AGCTGATGAC CAAGAAGGAA
ATCTCCGGCG TCATCGATCA GGTGTATCGC CACTGCGGTC AGAAAGAGAC CGTGATGTTC
TGCGACCGCA TCATGGCGCT CGGCTTCTAC AACGCGTTCA AGGCCGGCAT TTCGTTCGGC
AAGGACGACA TGGTGGTGCC GGCGTCGAAG TGGAAGACCG TCGAGGATAC CCGCACGCTC
GCCAAGGAAT TCGAGCAGCA GTACAATGAC GGCCTGATCA CCCACGGCGA AAAGTACAAC
AAGGTGGTCG ACGCCTGGTC GAAGTGCACC AAGAAGATCT CGGAAGACAT GATGACGGAA
ATCTCCGCCG TCAAAAAGAA TCCGAAGGGC GGCGAAGCCC AGATCAACTC GATCTTCATG
ATGTCGAACT CCGGCGCCCG TGGTTCGCAG GACCAGATGC GCCAGCTCGC CGGCATGCGC
GGCCTGATGG CCAAGCCGTC GGGCGAGATC ATCGAGACGC CGATCATCTC GAACTTCAAG
GAAGGCCTCT CGGTTCTCGA ATACTTCAAC TCGACCCACG GCGCCCGTAA GGGTCTGGCC
GACACCGCGT TGAAGACCGC GAACTCCGGC TACCTGACGC GGCGTCTGGT CGACGTCGCG
CAGGACTGCA TCATCACCGC GGACGATTGC GGCACCAAGC TCGGCATCAA GATGCGCGCC
ATCATCGACG CCGGCACCGT GGTGGCGTCG TTGGCCTCGC GGATTCTCGG CCGCACCGCG
GGCGAGGATC TGCGCGATCC GTTGACCAAC AAGGTGGTGG TGAAGCGCGG CACGCTGATG
GAAGAGAGCC ACGTCGACGC GCTGCAGCAG GCCGGCATCC AGGAAGTGAA GATCCGCTCG
GCTTTGACCT GCGAACTGGT CAACGGCATC TGCGGCAAGT GCTACGGGCG CGATCTCGCC
CGCGGCACCC CGGTCAACCA CGGCGAGGCT GTCGGCGTCA TCGCCGCGCA GTCGATCGGC
GAGCCCGGCA CCCAGCTGAC GATGCGCACG TTCCACATCG GCGGCGCGGC GCAGATCAAC
GAGCAGTCGT TCATCGAGTC GAACTTCGAC GGCAAGGTGA CGATCAAGAA CAAGGCGATC
GCCAAGAACG GCGAGGGCCA TCTGGTGGCG ATGGTGCGCA ACATGGTCGT TGCGGTCACC
GACGCCGACG GCACCGAACG CGCCACCCAT CGCATCCAGT ACGGCGCGCG GATGCGCGTC
GACGAAGGCG ACATGGTGAA GCGCGGCCAG CGCATCGCCG AGTGGGATCC CTACACCCGC
CCGGTGCTGA CCGAAGTGGA AGGCATCATC GGCTTCGAGG ATCTGGTCGA AGGCCAGTCG
ATCTCGGAGA CGCTGGACGA ATCCACCGGC ATCGCCAAGC GCGTGGTGAT CGACTGGCGC
AGCCAGCGCG GTGGCGCTGA CCTGCGTCCG GCGATCGTCA TCAAGGGCAA GGACGGCAAG
ATCCTCAAGC TCGCGCGTGG CGGCGAAGCC CGCTACATGC TGTCGGTCGA CGCCATTCTG
TCGGTCGACG TCGGCGCCAA GGTGAAGACC GGCGACATCC TCGCCCGTAT CTCCACCGAA
AGCGCCAAGA CCCGCGACAT CACCGGCGGT CTGCCGCGGG TGGCGGAACT GTTCGAGGCC
CGCAAGCCGA AGGACGCCGC CATCATCGCG GAAATCTCCG GCACCATCCG GTTCGGACGC
GACTACAAGA ACAAGCGTCG GATTTCGATC GAGCCGGTGG ACACCACCGA GGAGACCCGC
GAGTACTTGA TCCCGAAGGG CAAGCACATC CATCTGCAGG ACGGCGACAT CGTCGAAAAG
GGCGATTTCA TCGTCGAAGG CAATCCGGCG CCGCACGACA TTCTGGCGAT CAAGGGCATC
GAGGAACTCG CTGCCTATCT GGTCAACGAA ATCCAGGAGG TCTATCGGCT GCAGGGCGTG
TTGATCAACG ACAAGCACAT CGAGGTGATC GTTCGCCAGA TGCTGCAGAA GGTCGAGGTC
ACCGATCAGG GCGAGACCGA CATGATTTCG GGCGAGCAGA TCGACAAGAT CGAATTCGAC
CAGATCAACG CCAAGGCCAA GGAAGAGGGC AAGAAGATCG CCACCGGCAC CCCGGTGCTG
CTCGGCATCA CCAAGGCCTC TCTGCAGACC CGCTCGTTCT TCTCGGCGGC GTCGTTCCAG
GAGACCACCC GCGTGCTCAC CGAAGCCGCC GTCAACGGCA AGGTGGATCC GCTGGAAGGC
CTCAAGGAGA ACGTCATCGT CGGCCGGCTG ATCCCGGCGG GCACCGGCGC CTCGATGGCC
AAGATCCGCG AAGTGGCGGT GAAGCGCGAC AAGCTGATTC TCGACGAGCG CGAGAAGCAG
GCGACCATCG TGCCGAGCGC CCCGGAACCG GAACCGCTGG CGCTGCCGAC CCCCGAACAG
AGCTAA
|
|---|
| Protein sequence | MNQEIMNLFN PTTPAQVFDQ IRISIASPEK ILSWSYGEIK KPETINYRTF KPERDGLFCA
RIFGPIKDYE CLCGKYKRMK YKGIICEKCS VEVTLSRVRR ERMGHIELAA PVAHIWFLKS
LPSRIGLLLD MTLKDLERIL YFEYYVVLEP GLTALKDRQL LSEEEYLRAQ DEYGQDSFTA
MIGAEAIREL LKGLELEKLE ASLRVEMQET ESDIKHKKLA KRLKIVEAFR FSGNKPEWMI
LTVVPVIPPD LRPLVPLDGG RFATSDLNDL YRRVINRNNR LKRLMELRAP DIIIRNEKRM
LQEAVDALFD NGRRGRVITG ANKRPLKSLA DMLKGKQGRF RQNLLGKRVD YSGRSVITVG
PELRLHQCGL PKKMALELFK PFIYSRLDAK GLSTTVKQAK KLVEKERPEV WDILDEVIRE
HPILLNRAPT LHRLGIQAFE PVLIEGKAIQ LHPLVCAAFN ADFDGDQMAV HVPLSLEAQL
EARVLMMSTN NILHPANGLP IIVPSQDIVL GLYYLSILRE GLPGEGKLFG EAAEIEHALH
AKVIHLHTKI KYRWEGLDEN GKQVSRWYET TAGRTMLGQV LPKSVKMPFD VINKLMTKKE
ISGVIDQVYR HCGQKETVMF CDRIMALGFY NAFKAGISFG KDDMVVPASK WKTVEDTRTL
AKEFEQQYND GLITHGEKYN KVVDAWSKCT KKISEDMMTE ISAVKKNPKG GEAQINSIFM
MSNSGARGSQ DQMRQLAGMR GLMAKPSGEI IETPIISNFK EGLSVLEYFN STHGARKGLA
DTALKTANSG YLTRRLVDVA QDCIITADDC GTKLGIKMRA IIDAGTVVAS LASRILGRTA
GEDLRDPLTN KVVVKRGTLM EESHVDALQQ AGIQEVKIRS ALTCELVNGI CGKCYGRDLA
RGTPVNHGEA VGVIAAQSIG EPGTQLTMRT FHIGGAAQIN EQSFIESNFD GKVTIKNKAI
AKNGEGHLVA MVRNMVVAVT DADGTERATH RIQYGARMRV DEGDMVKRGQ RIAEWDPYTR
PVLTEVEGII GFEDLVEGQS ISETLDESTG IAKRVVIDWR SQRGGADLRP AIVIKGKDGK
ILKLARGGEA RYMLSVDAIL SVDVGAKVKT GDILARISTE SAKTRDITGG LPRVAELFEA
RKPKDAAIIA EISGTIRFGR DYKNKRRISI EPVDTTEETR EYLIPKGKHI HLQDGDIVEK
GDFIVEGNPA PHDILAIKGI EELAAYLVNE IQEVYRLQGV LINDKHIEVI VRQMLQKVEV
TDQGETDMIS GEQIDKIEFD QINAKAKEEG KKIATGTPVL LGITKASLQT RSFFSAASFQ
ETTRVLTEAA VNGKVDPLEG LKENVIVGRL IPAGTGASMA KIREVAVKRD KLILDEREKQ
ATIVPSAPEP EPLALPTPEQ S
|
|---|
| |