| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_3417 |
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| Symbol | |
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| ID | 3970461 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB18 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007925 |
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| Strand | - |
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| Start bp | 3804796 |
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| End bp | 3806199 |
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| Gene Length | 1404 bp |
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| Protein Length | 467 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 637926528 |
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| Product | peptidase S1C, Do |
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| Protein accession | YP_533276 |
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| Protein GI | 90424906 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain |
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| TIGRFAM ID | [TIGR02037] periplasmic serine protease, Do/DeqQ family |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.966592 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.139479 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGACTTCGA CACGCGCGCT CACCGCCCTG GTGCTGGCCT TGATTCTCTC CGTTCCGGCG
CAGGCGCAGC CGCAGGATCG CCGGGTGCCG TCCTCGCCCG CCGAACTGAA GCTCAGCTAC
GCGCCGATCG TGCAGCGGGT GCAGCCGGCG GTGGTCAACG TCTACGCCGC CAAGGTGGTG
CAGAACCGCA ACCCGCTGTT GGAGGATCCG ATCTTCCGCC GCTTCTTCGG CGTGCCCGGC
CAGCAGCCGG AGCAGATGCA GCGCTCGCTC GGCTCGGGCG TGATGGTCGA TCCGTCGGGC
CTGGTGGTGA CCAACAACCA CGTCATCGAG GGCGCCGATC AGGTCAAGGT GTCTTTGTCC
GACAAGCGGG AATTCGAGGC CGAGATCGTG CTGAAGGACA GCCGCACCGA CCTCGCGGTG
CTGCGGCTGA AAGAGGTCGC CGGCGAGAAA TTCCCGACGC TGGATTTCTC CAACTCCGAT
GAACTCTTGG TCGGCGACGT GGTGCTGGCG ATCGGCAATC CGTTCGGCGT CGGCCAGACC
GTGACCCACG GCATCATCTC GGCGTTGGCG CGCACCCAGG TCGGCATCAC CGACTACCAA
TTCTTCATTC AGACCGACGC CGCGATCAAT CCCGGCAATT CCGGCGGCGC CTTGGTCGAC
GTCAACGGCC GGCTGGTCGG CATCAACACG GCTATCTTCT CGCGCTCCGG CGGCTCGCAG
GGCATCGGCT TTGCGATTCC GGCCAACATG GTGCGGGTGG TGGTGGCTTC GGCGAAGAGC
GGCGGCAAGG AGGTCAAGCG GCCGTGGCTC GGCGCGCGGC TGCAGGCGGT GACGCCGGAG
ATCGCCGAAA CGCTCGGTCT CAAGCTGCCG AGCGGCGCGC TGGTGGCGAG CGTCACCGCG
GGCAGCCCCT CGGCCCGCGC AGGATTGAAA CTCTCCGACC TGATCATTGC CATCGACGGC
TTCACCGTCG ACGACCCCAA CGCGTTCGAT TATCGCTTCG TCACCAGGCC GCTCGGCGGC
GCCGCGCAGG TCGACGTGCA GCGCGGCGGC AAGCTGGTCA AGCTGGCGAT CCCGCTGGAG
ACCGCGCCGG ACACCGGGCG CGACGAAATC GTGGTGAAGT CGCGCTCGCC GTTCCAGGGC
GCCAAGGTCG CCAACATCTC GCCGGCGCTG GCGGACGAAT TGCGGCTCGA TCCCAGCGTC
GAGGGCGTGG TGGTGATCGA TCTCGCCGAC GATGCGACGG CCGCCGGCGT CGGCTTCCAG
AAGGGCGACA TCATCATCGC CGTCAACAAC AAGAGGATCG CCCGCACCGC CGACCTCGAG
CGGATCGCCG CCGAACCCTC GCGGCTGTGG CGCATCACCG TGGTGCGCGG CGGCCAGCAG
ATCAACGTCA CGCTCGGCGG ATGA
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| Protein sequence | MTSTRALTAL VLALILSVPA QAQPQDRRVP SSPAELKLSY APIVQRVQPA VVNVYAAKVV
QNRNPLLEDP IFRRFFGVPG QQPEQMQRSL GSGVMVDPSG LVVTNNHVIE GADQVKVSLS
DKREFEAEIV LKDSRTDLAV LRLKEVAGEK FPTLDFSNSD ELLVGDVVLA IGNPFGVGQT
VTHGIISALA RTQVGITDYQ FFIQTDAAIN PGNSGGALVD VNGRLVGINT AIFSRSGGSQ
GIGFAIPANM VRVVVASAKS GGKEVKRPWL GARLQAVTPE IAETLGLKLP SGALVASVTA
GSPSARAGLK LSDLIIAIDG FTVDDPNAFD YRFVTRPLGG AAQVDVQRGG KLVKLAIPLE
TAPDTGRDEI VVKSRSPFQG AKVANISPAL ADELRLDPSV EGVVVIDLAD DATAAGVGFQ
KGDIIIAVNN KRIARTADLE RIAAEPSRLW RITVVRGGQQ INVTLGG
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