| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_3370 |
|---|
| Symbol | |
|---|
| ID | 3970530 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB18 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007925 |
|---|
| Strand | + |
|---|
| Start bp | 3743982 |
|---|
| End bp | 3745637 |
|---|
| Gene Length | 1656 bp |
|---|
| Protein Length | 551 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 637926482 |
|---|
| Product | RND efflux system, outer membrane lipoprotein, NodT |
|---|
| Protein accession | YP_533230 |
|---|
| Protein GI | 90424860 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1538] Outer membrane protein |
|---|
| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.0755058 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGAGCAA CGGCGATCCG CCACAGAGGA AACAACGAGC ACAGCGCGGG TCGATGGAGC
TTGGCTACGG CAGCGCCGCG CGGGCGGATC TGGGCGGTCG CGGGCTCGCT GCTGCTCTCC
GGCTGCATGG TGGGGCCCGA CTTTGAGCCG CCGCTGCCGC CGGATGTCAG CGGCTACACC
CCGCAGGCCG GGTTGCGGCC GGCGATGGCG AGCGAGATTG CCGGCGGCGC GCCGCAGCGG
TTTGTGGAGG GGCTCGAAGT CGGCGGGCAG TGGTGGCGGG AGTTCAACTC GCCGCAGATC
AACGCCTTCG TCGAAGAGGC GGTGCACAAC CACCCGAATG TGCGGGCCGC CCAATATGCG
CTGCGGGCGG CGCGTGAAAC CGCGCTGCAG ACCCGAGGCG CGCTGGCGCC GCAGATATCG
GGCCAATCCT CGGCAACGCG ACAGCAGGTG CCCGCGGCCG CCGGCGGCAC CACCGGCGCG
CCATCGATCT ACAATCTCTA TGATGCGACG GTGAACGTCA GCTACACGCT CGATCTGTTC
GGTGGCCTGC GGCGGCAGGT CGAATCCGCC GAGGCGCTGG CGCAGTATCG GCGGTTCGAG
ATGGAGGCAA CCTATCTGGC TCTGACTGCC AATGTGGTGA CCTCCGCGAT CTCGGATGCC
TCGCTGCGGG CGCAGATCGC GGCCTCGCAG GCCATCATCA AGGCACAGAC CGATCAGCTA
CAGCGCGTGC AGCGGCAGTT CGAAGTGGGC GCCAACTCGC AGGCCGAAGT GCTCGCTCAG
CGCGCAACGC TGGCGCAGAC CCAGGCCACG CTGCCGCCGC TGCAGAAGCA ATTAGCTCAG
GGCCGCAACC AGCTGATGGC CTATCTCGGC CGGCTGCCCA GCCAGGATCG CGGCGAGAGC
GTGAATCTGT CGAGCCTGCG GCTGCCGCGC AAGCTGCCGG TGAGTTTGCC GGCGCATCTG
GTGCGGCAGC GGCCGGATAT CCGCCAGGCC GAGGCGACGC TGCACCAGGC GGCGGCGCTG
GTCGGTGTCA ACACCGCTAA CCTATTGCCG CAATTCACCA TTACGCCCTC GGCGGGGACT
GACGCGCTCA CCGTCGGGCA GTTGTTTACG CCGCAAAGCG CAGCCTTCAC GCTTGCGGCA
AACCTGGGGC AGAAGCTGGT CGACGGTGGC CAGGCCTACC GCACCAAGGA AGCCAGCGTC
GCCAGCTTCG AGCAGGACTA CGCGCTCTAT CAGAGTACCA TCATCACCGC CTTCCAGAAC
GTGGCGGACG CGCTGCGCGC CGTGCAATTC GATGCGGTCA CGCTCCGCGC CCAGGGGGCG
GCGGAGAAAG CCGCGCTCGA CAGCCTGACC ATGGCGCAGG AGCAATTCAA GTCCGGCGCG
ATCGGCTATG CCATCATCAT CACGGCGCAG CAGACCTACC AGAACGCCGT CATCTTGCGG
ATCCAGGCTC AGGCGATGCG CTATGCCGAC ACCGTGGCGC TGTTCCAGGC GTTGGGTGGC
GGATGGTGGC ATCGCTTCGA CGAGACCCGC GAGGCGTTTC CGCGCAACGG CGGTTACTTC
CAGGGACCGG ACGGCCCCGC GCTGTCCGCA ACCCGAGACG GCGCGAGCAA CGAACCCGCG
CTGACGCCCG ACCCTGAGAT GGAGCGCCCC CGGTGA
|
|---|
| Protein sequence | MGATAIRHRG NNEHSAGRWS LATAAPRGRI WAVAGSLLLS GCMVGPDFEP PLPPDVSGYT
PQAGLRPAMA SEIAGGAPQR FVEGLEVGGQ WWREFNSPQI NAFVEEAVHN HPNVRAAQYA
LRAARETALQ TRGALAPQIS GQSSATRQQV PAAAGGTTGA PSIYNLYDAT VNVSYTLDLF
GGLRRQVESA EALAQYRRFE MEATYLALTA NVVTSAISDA SLRAQIAASQ AIIKAQTDQL
QRVQRQFEVG ANSQAEVLAQ RATLAQTQAT LPPLQKQLAQ GRNQLMAYLG RLPSQDRGES
VNLSSLRLPR KLPVSLPAHL VRQRPDIRQA EATLHQAAAL VGVNTANLLP QFTITPSAGT
DALTVGQLFT PQSAAFTLAA NLGQKLVDGG QAYRTKEASV ASFEQDYALY QSTIITAFQN
VADALRAVQF DAVTLRAQGA AEKAALDSLT MAQEQFKSGA IGYAIIITAQ QTYQNAVILR
IQAQAMRYAD TVALFQALGG GWWHRFDETR EAFPRNGGYF QGPDGPALSA TRDGASNEPA
LTPDPEMERP R
|
|---|
| |