Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPC_3360 |
Symbol | |
ID | 3971074 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB18 |
Kingdom | Bacteria |
Replicon accession | NC_007925 |
Strand | + |
Start bp | 3714771 |
End bp | 3715949 |
Gene Length | 1179 bp |
Protein Length | 392 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 637926471 |
Product | diguanylate cyclase |
Protein accession | YP_533220 |
Protein GI | 90424850 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.441275 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 0.662685 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCATTT TCCACGCGCA ACCAGAAGCG GCGCTCCGGC ATGCCGAAGC GCCTGCGTCG GAGCACGGCC ACGCGCTGGA TCCGGCTTTG GAGAAGGATC GCCGGTCGCC GCGCGGCCAC GGACATGAGT ATTGGCTGTT CACCATCACG GTGCTGAACC TGTCGCCGCT GCTGATCGAC TGGATCGTGT TGCGGCAGCA TTTCTCGTTG GCCCTGCTGT TGCGCCTCGG CGTGGTTGCG CCGATCGGTA TATTCGGGCT GTGGCTCTGC CACTTCACCA CGCACACAAG GTTGCAGGCG TGGGCGACGG CTGCGGCCAC CCTGGCGCTG AGCCTGGTCG CCACCGCGCT CGGGCAATAC GCCGCCGAGC CTTATGCCAC CCGTTACATG ATGGCGGCCC AGTTCCTGAT TTTCGGCGCC GCCGTGTTCA CGGCGCTGCC ATGGCGTCTG ACCAAGTTGA TGACGTTGAT CGCCGTCGCC GGATTCGCGC TGATCGTATC CAGCGGACTG CGGTGGCCTC CGCTGGACGG CAACCTCGAC CTGGTGGTGT TCTGCCTCAC CACCACTGCG ATTGCGCTCT ACTTGCGACG CCGCAAGGAC CTGCAGTTGG CGGAGATCAT CAACCTACGG AAGCTCGATT CCAGCCACGC CAGCGAACTG CGCGACGCCA ATCACAAGCT CTCGCTGCTC TCGCACACCG ATCCGCTCAC CGGCGTATTC AATCGACGCT ATCTCGACCG CCTGGTCGAT CAGCTCGCGA TTTCGATCGC GCCCAATGCC GGCTACGGCC TGCTGATGAT CGACGTCGAC CATTTCAAGT TCTTGAATGA TCGCTGCGGG CATTTGCATG GCGATCAATG CCTGAGGCTG ATCGCCACGG CGATTCAGCG CAGCCTGCGC AGCTCGGACG ACGCCGTGAT CCGCTATGGC GGCGAGGAGT TCGCGGTGGT GCTGCCCGAT GCCGACCTGT TCGAGACCAT GCAGGTCGCC GAGGGCTTGC GCGCCGCCAT CGGTGCGTTG CGGATTCCAA ATCCCGGACT CGGCCCCGAG GCGTTCGTCA GCGTCAGCAT CGGCGCTTAC AGCGCGACGA CAGCGGAGGA TGTCACCGAT TCGCTGCGCT GCGCCGACCA GGCGCTGTAC TGCGCCAAAC AGGCCGGCCG CGACCGCGTG TTCGTCTGA
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Protein sequence | MSIFHAQPEA ALRHAEAPAS EHGHALDPAL EKDRRSPRGH GHEYWLFTIT VLNLSPLLID WIVLRQHFSL ALLLRLGVVA PIGIFGLWLC HFTTHTRLQA WATAAATLAL SLVATALGQY AAEPYATRYM MAAQFLIFGA AVFTALPWRL TKLMTLIAVA GFALIVSSGL RWPPLDGNLD LVVFCLTTTA IALYLRRRKD LQLAEIINLR KLDSSHASEL RDANHKLSLL SHTDPLTGVF NRRYLDRLVD QLAISIAPNA GYGLLMIDVD HFKFLNDRCG HLHGDQCLRL IATAIQRSLR SSDDAVIRYG GEEFAVVLPD ADLFETMQVA EGLRAAIGAL RIPNPGLGPE AFVSVSIGAY SATTAEDVTD SLRCADQALY CAKQAGRDRV FV
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