Gene RPC_3360 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPC_3360 
Symbol 
ID3971074 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB18 
KingdomBacteria 
Replicon accessionNC_007925 
Strand
Start bp3714771 
End bp3715949 
Gene Length1179 bp 
Protein Length392 aa 
Translation table11 
GC content64% 
IMG OID637926471 
Productdiguanylate cyclase 
Protein accessionYP_533220 
Protein GI90424850 
COG category[T] Signal transduction mechanisms 
COG ID[COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain 
TIGRFAM ID[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.441275 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value0.662685 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCATTT TCCACGCGCA ACCAGAAGCG GCGCTCCGGC ATGCCGAAGC GCCTGCGTCG 
GAGCACGGCC ACGCGCTGGA TCCGGCTTTG GAGAAGGATC GCCGGTCGCC GCGCGGCCAC
GGACATGAGT ATTGGCTGTT CACCATCACG GTGCTGAACC TGTCGCCGCT GCTGATCGAC
TGGATCGTGT TGCGGCAGCA TTTCTCGTTG GCCCTGCTGT TGCGCCTCGG CGTGGTTGCG
CCGATCGGTA TATTCGGGCT GTGGCTCTGC CACTTCACCA CGCACACAAG GTTGCAGGCG
TGGGCGACGG CTGCGGCCAC CCTGGCGCTG AGCCTGGTCG CCACCGCGCT CGGGCAATAC
GCCGCCGAGC CTTATGCCAC CCGTTACATG ATGGCGGCCC AGTTCCTGAT TTTCGGCGCC
GCCGTGTTCA CGGCGCTGCC ATGGCGTCTG ACCAAGTTGA TGACGTTGAT CGCCGTCGCC
GGATTCGCGC TGATCGTATC CAGCGGACTG CGGTGGCCTC CGCTGGACGG CAACCTCGAC
CTGGTGGTGT TCTGCCTCAC CACCACTGCG ATTGCGCTCT ACTTGCGACG CCGCAAGGAC
CTGCAGTTGG CGGAGATCAT CAACCTACGG AAGCTCGATT CCAGCCACGC CAGCGAACTG
CGCGACGCCA ATCACAAGCT CTCGCTGCTC TCGCACACCG ATCCGCTCAC CGGCGTATTC
AATCGACGCT ATCTCGACCG CCTGGTCGAT CAGCTCGCGA TTTCGATCGC GCCCAATGCC
GGCTACGGCC TGCTGATGAT CGACGTCGAC CATTTCAAGT TCTTGAATGA TCGCTGCGGG
CATTTGCATG GCGATCAATG CCTGAGGCTG ATCGCCACGG CGATTCAGCG CAGCCTGCGC
AGCTCGGACG ACGCCGTGAT CCGCTATGGC GGCGAGGAGT TCGCGGTGGT GCTGCCCGAT
GCCGACCTGT TCGAGACCAT GCAGGTCGCC GAGGGCTTGC GCGCCGCCAT CGGTGCGTTG
CGGATTCCAA ATCCCGGACT CGGCCCCGAG GCGTTCGTCA GCGTCAGCAT CGGCGCTTAC
AGCGCGACGA CAGCGGAGGA TGTCACCGAT TCGCTGCGCT GCGCCGACCA GGCGCTGTAC
TGCGCCAAAC AGGCCGGCCG CGACCGCGTG TTCGTCTGA
 
Protein sequence
MSIFHAQPEA ALRHAEAPAS EHGHALDPAL EKDRRSPRGH GHEYWLFTIT VLNLSPLLID 
WIVLRQHFSL ALLLRLGVVA PIGIFGLWLC HFTTHTRLQA WATAAATLAL SLVATALGQY
AAEPYATRYM MAAQFLIFGA AVFTALPWRL TKLMTLIAVA GFALIVSSGL RWPPLDGNLD
LVVFCLTTTA IALYLRRRKD LQLAEIINLR KLDSSHASEL RDANHKLSLL SHTDPLTGVF
NRRYLDRLVD QLAISIAPNA GYGLLMIDVD HFKFLNDRCG HLHGDQCLRL IATAIQRSLR
SSDDAVIRYG GEEFAVVLPD ADLFETMQVA EGLRAAIGAL RIPNPGLGPE AFVSVSIGAY
SATTAEDVTD SLRCADQALY CAKQAGRDRV FV