| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_3276 |
|---|
| Symbol | |
|---|
| ID | 3971732 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB18 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007925 |
|---|
| Strand | - |
|---|
| Start bp | 3626956 |
|---|
| End bp | 3628374 |
|---|
| Gene Length | 1419 bp |
|---|
| Protein Length | 472 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 637926387 |
|---|
| Product | FAD linked oxidase-like |
|---|
| Protein accession | YP_533137 |
|---|
| Protein GI | 90424767 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0277] FAD/FMN-containing dehydrogenases |
|---|
| TIGRFAM ID | [TIGR00387] glycolate oxidase, subunit GlcD |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.734148 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.868231 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGGCCTGA CCATCACCAA TCAACCGAAG CGAGCGGAGC CTGCGGCGGT GGCCGCCGCC
ATTGAAGCGC TCGCCGCACG GTTCGGCAAC CGCCTGATCA CTTCGCTGGC GGTCCGTGAG
CAGCACGGCC ACACCACCAC CTGGTTGCCG ACGCAGCCGC CCGACGCCGT GGTGATGGCG
CAGGACACCG CCGATATCCA GGACGTGGTG CGGATCTGCG CCAAGCACAG CGTGCCGGTT
ATCGCGTTCG GCACCGGCAC CTCGCTGGAG GGCCAGATCA ACGCCCCGGC GGGCGGGGTC
TGCATCGACC TGCGCGACAT GAACAAGATT TTGGCGGTGC ACGCCGAGGA CCTCGACTGC
GTGATCCAGC CCGGCGTCAC CCGCAAGGCG TTGAATGAGC ATCTGCGCGA CCAGGGTGTG
TTCTTCCCGA TCGATCCCGG CGCCGACGCC TCGATCGGCG GCATGGCCTC GACCCGCGCC
TCGGGCACCA ATGCGGTGCG CTACGGCACC ATGCGCGACA ACGTGCTGGC GCTGAAAGTG
GTGCGCGGCG ACGGCGAGAT CATCACCACC GGCACCCGGG CGAAGAAATC CGCCGCCGGC
TACGACCTCA CGCATCTGTT TATCGGCGCC GAAGGCACGC TCGGCATCAT CTCCGAACTG
ACCATCAAGC TGCGCGGCAT TCCGGACACC ATTGCGGCGG CGGCGTGTTC GTTCGAGACC
GTGGAGGGCG CCTGCCAGGC GGTGATCCTG GCGATCCAGA CCGCGATCCC GGTGGCGCGG
ATCGAACTCC TGAACGTCGC GCAGGTGCGC TGCTGCAACG CCTATTCGAA ACTGACGCTG
CCGGAGACGC CGCTATTGCT GCTGGAATTC CACGGCAGCG AGGCCGAGGT CGCCGAGCAG
TCGAAGAATT TCCGCGAACT CGCCGCCGAG TGCGGCGGCG GCGATTTCAC CTGGACGACG
CGGCCGGAGG ATCGCAGCAA ACTTTGGCAG GCGCGGCACG ACGCCTATTG GTCGGTGCGG
GCGCTGCGGC CCGGCGCCGG CGTGGTCGCC ACCGACGTCT GCGTGCCGAT CTCGCGGCTG
GCGGATTGCG TGGTGGAGAC CGAGGAAGAC TTGAAGCGGC TCGGTCTGGT GGCGCCGATC
GTCGGCCACG TCGGCGACGG CAATTTCCAT TGCTCGCTGC TCTGCAACGT CGACGACCCC
GAGGAGATGG CGCGCGGCGA CGAGTTCATG CACCGGCTGG TCGAGCGGGC GCAGGCGATG
GACGGCACCT GCACCGGCGA ACACGGCATC GGGCAGGGCA AGCAGAAGTA TCTCAAGGCG
GAACTCGGCA GCGAGGCGCT GGACGCGATG CGGGCGGTGA AGCGCGCGCT CGATCCGCAG
AGCATCTTCA ATCCCGGGAA GATTTTGCCG CAACCTTAG
|
|---|
| Protein sequence | MGLTITNQPK RAEPAAVAAA IEALAARFGN RLITSLAVRE QHGHTTTWLP TQPPDAVVMA
QDTADIQDVV RICAKHSVPV IAFGTGTSLE GQINAPAGGV CIDLRDMNKI LAVHAEDLDC
VIQPGVTRKA LNEHLRDQGV FFPIDPGADA SIGGMASTRA SGTNAVRYGT MRDNVLALKV
VRGDGEIITT GTRAKKSAAG YDLTHLFIGA EGTLGIISEL TIKLRGIPDT IAAAACSFET
VEGACQAVIL AIQTAIPVAR IELLNVAQVR CCNAYSKLTL PETPLLLLEF HGSEAEVAEQ
SKNFRELAAE CGGGDFTWTT RPEDRSKLWQ ARHDAYWSVR ALRPGAGVVA TDVCVPISRL
ADCVVETEED LKRLGLVAPI VGHVGDGNFH CSLLCNVDDP EEMARGDEFM HRLVERAQAM
DGTCTGEHGI GQGKQKYLKA ELGSEALDAM RAVKRALDPQ SIFNPGKILP QP
|
|---|
| |