| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_3259 |
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| Symbol | |
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| ID | 3971771 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB18 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007925 |
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| Strand | - |
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| Start bp | 3608218 |
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| End bp | 3609711 |
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| Gene Length | 1494 bp |
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| Protein Length | 497 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 637926370 |
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| Product | peptidase S1C, Do |
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| Protein accession | YP_533120 |
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| Protein GI | 90424750 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain |
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| TIGRFAM ID | [TIGR02037] periplasmic serine protease, Do/DeqQ family |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.324344 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.259222 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCGGTG CGATCTCAGC CCTTAGCCGC CGCCTGCGCC CGATCGTCGT GGCCGTTGGC
CTTGCCTCTG CCGCCGCGTT CAGCGCCGCC CCGGCGCAGG CCCGCGGTCC GGACGGCATC
GCCGACGTCG CCGAAAAGGT GATCGACGCG GTGGTCAATA TCTCGACCAC GCAGACCATC
GAAGCCAAGG CCGGAGCCGG CGAGGGCAAG GGGGCGGCGC CGCAATTGCC GCCGGGATCG
CCGTTCGAGG AGTTCTTCGA CGACTTCTTC AAGAACCGCC GCGGCGGCGA GAAGGGCAGC
GGGCCGCGCA AGACCAATTC GCTGGGCTCC GGCTTCATCG TCGACACCGC CGGCATCGCC
GTGACCAACA ATCACGTCAT TGCGGACGCC GACGAGATCA ACATCATCAT GAACGACGGC
ACCAAGATCA AGGCGGAGCT GGTCGGCGTC GACAAGAAGA CCGATCTCGC CGTCTTGAAG
TTCAAGCCGC CGGCCAAGCC GCTGGTGGCG GTGAAGTTCG GCGACAGCGA CAAGTTGCGG
CTTGGCGAAT GGGTGATCGC GATCGGCAAC CCGTTCTCGC TCGGCGGCAC GGTGACCGCG
GGCATCGTCT CGGCGCGCAA CCGCGACATC AATTCCGGGC CCTATGACAG CTACATCCAG
ACCGACGCCG CGATTAATCG CGGCAATTCC GGCGGCCCGC TGTTCAACCT CGACGGCGAA
GTGATCGGCG TCAACACGCT GATCATCTCG CCGTCCGGCG GCTCGATCGG CATCGGCTTC
GCGGTGCCGT CGAAGACCGT GATCGGCGTG GTGGATTCGC TGCGGCAGTT CGGCGAATTG
CGCCGCGGCT GGCTCGGCGT GCGGATCCAG CAGGTCACCG ACGAGATCGC CGAGAGCCTC
AACATCAAGC CCGCGCGGGG AGCATTGATT GCCGGCGTTG AAGACAAGGG ACCGGCCAAG
CCCGCCGGCA TCGAGCCCGG CGACGTCGTC ATCAGGTTCG ACGGCAAGGA CATCAAGGAG
CCGAAGGATC TGTCGCGCGT GGTGGCCGAC ACCGCGGTCG GCAAGGCGGT CGACGTCGTC
ATTATCCGCA AGGGCAAGGA AGAGACCAAG CAGGTCACGC TCGGCCGGCT CGACGATGGC
GAGAAGCCGG TGCAGGCTTC GGTGAAGAGC CAGCCCGAAG CGGAAAAGCC GGTGACCCAG
AAGGCGCTCG GCCTCGACCT CGCCTCGCTC AGCAAAGAGC AGCGCGCCAA GTTCAAGATC
AAGGACAGCG TCAAGGGCGT GCTGATCACC AGCGTCGACA ACGGTTCGGA TGCGGCGGAG
AAGCGTTTGA GCGCCGGCGA CGTCATCGTC GAAGTGGCGC AGGAAACCGT CGGCAACGCC
AGCGACGTCA AGAAGCGGAT CGAGGCGATC AAGAAGGACG GCAAGAAATC GGTGCTGCTG
TTGGTCTCCA ACGGCGACGG CGAGTTGCGC TTCGTGGCGC TTGGCGTGCA GTAA
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| Protein sequence | MTGAISALSR RLRPIVVAVG LASAAAFSAA PAQARGPDGI ADVAEKVIDA VVNISTTQTI
EAKAGAGEGK GAAPQLPPGS PFEEFFDDFF KNRRGGEKGS GPRKTNSLGS GFIVDTAGIA
VTNNHVIADA DEINIIMNDG TKIKAELVGV DKKTDLAVLK FKPPAKPLVA VKFGDSDKLR
LGEWVIAIGN PFSLGGTVTA GIVSARNRDI NSGPYDSYIQ TDAAINRGNS GGPLFNLDGE
VIGVNTLIIS PSGGSIGIGF AVPSKTVIGV VDSLRQFGEL RRGWLGVRIQ QVTDEIAESL
NIKPARGALI AGVEDKGPAK PAGIEPGDVV IRFDGKDIKE PKDLSRVVAD TAVGKAVDVV
IIRKGKEETK QVTLGRLDDG EKPVQASVKS QPEAEKPVTQ KALGLDLASL SKEQRAKFKI
KDSVKGVLIT SVDNGSDAAE KRLSAGDVIV EVAQETVGNA SDVKKRIEAI KKDGKKSVLL
LVSNGDGELR FVALGVQ
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