| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_3244 |
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| Symbol | |
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| ID | 3971910 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB18 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007925 |
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| Strand | + |
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| Start bp | 3591553 |
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| End bp | 3593109 |
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| Gene Length | 1557 bp |
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| Protein Length | 518 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 637926355 |
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| Product | substrate-binding region of ABC-type glycine betaine transport system |
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| Protein accession | YP_533105 |
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| Protein GI | 90424735 |
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| COG category | [E] Amino acid transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1174] ABC-type proline/glycine betaine transport systems, permease component
[COG1732] Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.111227 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.744983 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGCCGT TCGCCGACCC GCGCTGGAGC GAGGCGCTGT CGCATCTGCC GGACTATCTC
GGCAACCACG TCCGGGTCAG CCTGGCCGCG CTTGCGCTGG GTCTCGCGGT CAGCCTGCCC
TTGGCGATCC TGGCGAGGCG GCGGCCGCTG CTGCGCTCCA CCCTGCTCGG CTTCGCCAGC
ATCGTGCAGA CGGTGCCCGG GCTGGCGCTG CTGGCGCTGT TCTATCCGCT GCTGCTGGCG
CTGGCGGCGC TATCGCTCAG CTGGTTCGGC GTCGGCTTCT CGGCGTTCGG ATTTCTGCCG
GCGGTGCTGG CGCTGGCGCT GTATTCGATG CTGCCGGTGC TGCGCAACAC CATCACCGGG
CTCGACGGCA TCGATCCGGT GCTGCTGGAG GCCGCGCAGG GCGTCGGCAT GACGCAGCGG
CAATCGCTGG TCATGGTCGA ACTGCCGCTG GCGTTGCCGG TGATGATGGC CGGCATCCGC
ACCGCCGCGG TGTGGGTGAT CGGCACCGCG ACGCTCTCCA CCCCGATCGG CCAGACCAGC
CTCGGCAACT ACATCTTCGC CGGATTGCAA ACCCAGAACT GGGTGTTGGT GCTGTTCGGC
TGCACCGCGG CGGCCGTGCT GGCGCTCGCG GTCGATCAAT TGCTGGCACT GGTCGAGCGC
GGGCTGACGC TGCGCAGCCG GCTGCGCGTC GCTGTGGGCG GGGTCGGCCT GCTCGCCCTG
CTGACCGCGG CGCTGGCACC GTCGCTGACG CAGCCTTCCT CGCGCTACGT CGTCGGCGCC
AAGACCTTCA CCGAGCAATA TGTGCTGTCG GCCTTGATCG CGCAGCGGCT GCGCGAAGCC
GGGTTGGCCG CGACCAGCCG CGAGGGGCTG GGCTCCAGCG TGATCTATGA CGCGCTCGCC
ACCAGCGACA TCGACGTCTA TGTGGATTAT TCCGGCACGC TGTGGGCCAA TCAGTTCCAC
CACCCCGAGA TCAAGCCGCG CGCGGAATTG CTCGCCGAGC TGACGAACGA ACTCGCCCGG
TCCAAGGTGA CGCTGCTCGG CGAACTCGGC TTTGCCAACG CCTATGCGCT GGTGATGCCG
CGCGCCCGCG CCGACGCGCT CGGCATTCGT TCGATCGCCG ATCTCGCGCG GCAGGCTTCG
ACGCTGTCGA TCGCCGGCGA TTACGAATTC TTCTCGCGAC CGGAATGGGC CGGGCTGCGC
CAAGCCTATG GCCTGGCGTT TCGCAGCCAG CGCACCCTGC AGCCGGACTT CATGTATGCG
GCGGTGGCCT CGGGTGAAGT CGACGTCATC GCCGGCTACA CCTCGGACGG GCTGATCGCC
AAATACGATC TCGTGGTGCT CGATGACCCA AAGGCCGCGA TCCCGCCCTA CGACGCCATC
GTGCTGTTGT CGCCGCGGCG CGCCGACGAT GCCGCGTTGC GCGCGGCGCT CGCGCCGCTC
ATCGGCAAGA TCGACATCGC CGCGATGCGC GCCGCCAATC TGCGCGCTGC GGGCGGCGAC
GGCGACAGCT CGCCCGACGC GGTGGCGCGG TGGCTGTGGC GGCGGATCGC GCCGTAG
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| Protein sequence | MTPFADPRWS EALSHLPDYL GNHVRVSLAA LALGLAVSLP LAILARRRPL LRSTLLGFAS
IVQTVPGLAL LALFYPLLLA LAALSLSWFG VGFSAFGFLP AVLALALYSM LPVLRNTITG
LDGIDPVLLE AAQGVGMTQR QSLVMVELPL ALPVMMAGIR TAAVWVIGTA TLSTPIGQTS
LGNYIFAGLQ TQNWVLVLFG CTAAAVLALA VDQLLALVER GLTLRSRLRV AVGGVGLLAL
LTAALAPSLT QPSSRYVVGA KTFTEQYVLS ALIAQRLREA GLAATSREGL GSSVIYDALA
TSDIDVYVDY SGTLWANQFH HPEIKPRAEL LAELTNELAR SKVTLLGELG FANAYALVMP
RARADALGIR SIADLARQAS TLSIAGDYEF FSRPEWAGLR QAYGLAFRSQ RTLQPDFMYA
AVASGEVDVI AGYTSDGLIA KYDLVVLDDP KAAIPPYDAI VLLSPRRADD AALRAALAPL
IGKIDIAAMR AANLRAAGGD GDSSPDAVAR WLWRRIAP
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