Gene RPC_3197 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPC_3197 
Symbol 
ID3971995 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB18 
KingdomBacteria 
Replicon accessionNC_007925 
Strand
Start bp3537948 
End bp3539201 
Gene Length1254 bp 
Protein Length417 aa 
Translation table11 
GC content65% 
IMG OID637926307 
Productbeta-lactamase 
Protein accessionYP_533058 
Protein GI90424688 
COG category[V] Defense mechanisms 
COG ID[COG1680] Beta-lactamase class C and other penicillin binding proteins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.27684 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value0.21357 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCCGGCC AAGATCCGAT CAAATCCGCG CCGTCCGCAG CCGCGTCCGG GATGTCCGCC 
GCCGCGCTGG GGCGCGTCGA CGACCATCTG AAGCGCCGTT ATCTCGACAG CGGACGGTTT
CCCGGCACCC AACTCCTGGT CTATCGCCGC GGCCAGATCG TGCACAACAC GGTGCAGGGC
TTTGCCGATG TCGAGCGGCA GACACCGGTC AAGCCGGATA CCATCTTCCG GATCTATTCG
ATGACCAAGC CGCTGACCTC GGTGGCGTTC ATGATGCTGG TCGAGGAAGG CCGCGTCGCG
CTCGACGAAC CGGTGGCCAA GTACATTCCG GAATGGAGCA ATCTCGGCGT GTTCCAGGCC
GGCATCGCGC CGAATTTCCT GACCCGGCCG CCGGCGCGGC CGATGCTGAT CGTCGACCTG
CTGCGGCACA CCTCGGGGCT CACCTACGGC TTCCAGAACC GCAGCAATGT CGACGCCGCC
TATCGCGAGA AGAAGATCGG CGAATTCGAA CTGGCCGGCA CGCTGCAGGG CATGATCGCG
GATCTGGCGA GCATTCCGCT GGAGTTCTCG CCCGGCGACG CCTGGAACTA CTCGGTCGCA
ACCGACGTGC TCGGCTATCT GATCGGCACC ATCAGCGGCC GACCGTTCGA AGAGTTTCTT
CACGAGCGCG TCCTCGATCC GCTCGGCATG ACCGACACCG GCTTCTTCGT GCCGCCGGAT
AAGGCGCATC GGCTGGCCGC CTGCTATGCG GCCGACGGCA AAGGCGGCTT CACGCTGTAC
GACGATCCGG CCAACAGTCC CTATCTGAAG CCGCCCGGCT TCGTCTCCGG CGGCGGCGGC
CTATTGTCGA CCGCCTCCGA CTATCTGATC TTTTGCCGCG CCTTGCTCAA TGGCGGCGAA
CGCGACGGCG TGCGGCTGAT CGGCCCGAAG ACGCTGGCGC TGATGACCTC GAATCATCTG
CCGGGCGGCC GCGACCTCAC CGAAATGTCG AAATCGATGT TCAGCGAGGC GGCCTATGCG
GGGATCGGCT TCGGGCTCGG TTTTTCGGTG ACGTTGCAAC CTGCGCGGAC GCTGATCGCC
GGCAGCGCCG GCGAATATGC CTGGGGCGGC GCCGCCTCGA CCGCGTTCTG GATCGACCCG
GCCGAGCAGC TGATCACCAT CTTCATGACC CAGCTGTTGC CGTCGAGCGC CTACCCGCTG
CGCCGCGAGC TGCGCACCAT GGTGTATGCG GCGATCACAG AGAGCAACGT GTAG
 
Protein sequence
MPGQDPIKSA PSAAASGMSA AALGRVDDHL KRRYLDSGRF PGTQLLVYRR GQIVHNTVQG 
FADVERQTPV KPDTIFRIYS MTKPLTSVAF MMLVEEGRVA LDEPVAKYIP EWSNLGVFQA
GIAPNFLTRP PARPMLIVDL LRHTSGLTYG FQNRSNVDAA YREKKIGEFE LAGTLQGMIA
DLASIPLEFS PGDAWNYSVA TDVLGYLIGT ISGRPFEEFL HERVLDPLGM TDTGFFVPPD
KAHRLAACYA ADGKGGFTLY DDPANSPYLK PPGFVSGGGG LLSTASDYLI FCRALLNGGE
RDGVRLIGPK TLALMTSNHL PGGRDLTEMS KSMFSEAAYA GIGFGLGFSV TLQPARTLIA
GSAGEYAWGG AASTAFWIDP AEQLITIFMT QLLPSSAYPL RRELRTMVYA AITESNV