Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPC_3174 |
Symbol | |
ID | 3972610 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB18 |
Kingdom | Bacteria |
Replicon accession | NC_007925 |
Strand | - |
Start bp | 3517839 |
End bp | 3518135 |
Gene Length | 297 bp |
Protein Length | 98 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 637926284 |
Product | XRE family transcriptional regulator |
Protein accession | YP_533035 |
Protein GI | 90424665 |
COG category | [K] Transcription |
COG ID | [COG1813] Predicted transcription factor, homolog of eukaryotic MBF1 |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.00826056 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCAAGA CCAAGGATCT GCACAAGGCC TGGAGCAAGG ACCCGACCTA TCGGGCCGAA TACGATGCGC TCGAGGAGGG ATTCACCGTG ATGGCCGCGA TCGCCAAAGC GCGTCGCCGC GCTGGCCTCA GCCAGGCCGA ACTCGCCCGC CGCATGAACA CCACGCAAAG CACCGTGGCC CGGCTGGAAA GCGGCCGCGG CCAACCCTCG ACCCGGACGC TGCTGCGGTT TGCCAAGGCG ACGGGGCACA AGCTGAAGAT CAGCTTTCAG CCGGTGAAGG GGAAGGCAAA ATCGTAG
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Protein sequence | MTKTKDLHKA WSKDPTYRAE YDALEEGFTV MAAIAKARRR AGLSQAELAR RMNTTQSTVA RLESGRGQPS TRTLLRFAKA TGHKLKISFQ PVKGKAKS
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