| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_3165 |
|---|
| Symbol | |
|---|
| ID | 3972601 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB18 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007925 |
|---|
| Strand | + |
|---|
| Start bp | 3509495 |
|---|
| End bp | 3510265 |
|---|
| Gene Length | 771 bp |
|---|
| Protein Length | 256 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 637926275 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_533026 |
|---|
| Protein GI | 90424656 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4221] Short-chain alcohol dehydrogenase of unknown specificity |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.234214 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.520266 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACACACG GCAGCGCACA TGGCAGCAAT CGGATCGCGT TGGTCACCGG CGCGGGCTCC
GGCGTCGGCC GCGCCACCGC GCTGGCGCTG CTGAGGGCCG GGTTCTGCGT GGTGCTGGCC
GGGCGCCGCG CCGACAAGCT CAACGAGACC GCGACCGCCG GCGAAGCGTT CGGCAAGAGC
CTGGTGGTGC CCGCCGACAT GACCGATCCG GACTCGATCG CTTCGTTGTT CGGCACCACC
ATGGAAGCGT TCGGCCGGCT CGATCTGTTG TTCAACAATG CCGGCATCGG CACCCCGCCG
CTGCCGCTCG AGGACGTCGC GCTGGCGCAA TGGCAGGCGG TGGTCGATAC CAATCTCACC
GCGCCGTTCC TGTGCACCCA GCACGCCTTC CGCATCATGA AGGAGCAGAG CCCGCGCGGC
GGCCGCATCA TCAACAACGG CTCGATCTCG GCGCATGCGC CGCGGCCGTT TTCCGCCGCC
TACACCGCGA CCAAGCACGC CATCAGCGGG CTGACCAAGG CGACCGCGCT CGACGGTCGC
GGCTACGACA TCGCCTGCGG CCAGATCGAC ATCGGCAATG CCGCGACCGA AATGACCGAG
CGGATGACAG GAGGAATCTT GCAACCGAAC GGCAGCCTGA TGGCGGAGCC GCGGATGGAC
GTCGACAACA TCGCCGAGGC GGTGGTCTAC ATGGCGACGC GTTCGCTCGA CGCCAACGTG
CTGTTCATGA CGGTGATGGC GACCAAGATG CCGTTCGTCG GACGGGGCTG A
|
|---|
| Protein sequence | MTHGSAHGSN RIALVTGAGS GVGRATALAL LRAGFCVVLA GRRADKLNET ATAGEAFGKS
LVVPADMTDP DSIASLFGTT MEAFGRLDLL FNNAGIGTPP LPLEDVALAQ WQAVVDTNLT
APFLCTQHAF RIMKEQSPRG GRIINNGSIS AHAPRPFSAA YTATKHAISG LTKATALDGR
GYDIACGQID IGNAATEMTE RMTGGILQPN GSLMAEPRMD VDNIAEAVVY MATRSLDANV
LFMTVMATKM PFVGRG
|
|---|
| |