| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_3125 |
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| Symbol | |
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| ID | 3972774 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB18 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007925 |
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| Strand | - |
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| Start bp | 3468811 |
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| End bp | 3471282 |
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| Gene Length | 2472 bp |
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| Protein Length | 823 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 637926234 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_532986 |
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| Protein GI | 90424616 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.655002 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGACTGCTG CCAAAAAACT CTCTTCCAAA TTCGACACCG AGAAGTTCGG CGATATCCCG
GTGCTGAAGC GCAAATGGCG GGCCGCGCTG AAGCCAGGAC AAACCTTGCC GCGCTACGAA
GACGTCATGC TGGGCAGCCT CGGCCGGCTC GCCGACCACA TCGTGTTGCT GAAGGGCGAG
GGCGCCTCGC TCGCGGTGTC GCGCAGCGGC CGCTACATCC AGGAGTGGCT CGGCCAGGAC
GCCTGGGACG TGCCGCTCGG CGACTTGCCG GCGGATTGCG CCACGGCGCT GGCGGAAGCC
GCCGCCTGCG GGTTGCAGAC CGGCAAGCCC TATCTCGCGG TGGCGCATTG CGTGCGCGCC
GGCATGGTGC GGACCTATGA CGTGGTGGCG CTGCCGACGG CGTCGCGCTG GGGCGAGAAA
CTGATCGGCG TCTATGTCAA CGAGCGCGGC GCGCAGTACA ATCTCTTGGA TGCGATCTTC
TCCTCGACCG ACGACGGCAT TCTCTCGCTG GCGGCGATCC GCAACGCCGA CAATCGGCCG
TTCGATTTCC AGATCGTCCA TCTCAACGAG GGCGCCTCGC GGCTGCTCGG CGAGCCGTCC
ACCGCCCTGC AATGGAGCCG GCTGCGCGCC GGCGGTCATC TGTTGTGTTC GCCGATGATG
GTGGCCAGGC TGCTGAACGT GATCAGCAGC GGCAACAGCG ACGTGCTGGA AATCGATCGC
GGCCAGCAGA CCATCCGGCT CAGCGCCACC GCCTTCGGCG ACGTGGTGTC GCTGACGGTG
TCCGACGTCA CCTCGCTGAA GAAGCGCGAA GATTCGTTCC GGCTGCTGTT CGACAACAAT
CCGATGCCGA TGTGGGTGTT CGACGCCAAG ACCACCGAAT TCCTCAGCGT CAACGACGCC
GCGGTGCAGC ACTACGGCTT CGAGCGCGAG AGTTTTCTGC GCATGAAGCT GCAGGATATC
TGGCCGGAGG ACGAACGCGA GGTGCATCTG CGCAGCGTGC TGCAGGTTGG CGACACCCAT
TACTCCGGCC GCAATTGGCG ACATCTGCGG GCCGACGGCA GCGAGATCGA GGTCTTGACC
TTTGGCCGCC AGGTGGCGTT CGAGGGGCGC GACGGCTTTC TGGTCGCCGT CGTCGACATC
ACCGAGCGCC GCAAGGCCGA GGCTAAGATC GCCTTCATGG CGCATCATGA CGGCCTCACC
AACCTGCCCA ACCGCGGCTC CTATCAGGAG CACCTGCATC AGGCGCTGGA GCTGAGCCGG
CGCTGCAACA GCAAGGTCGC GGTGCTGTGC GTCGATCTCG ACCTGTTCAA GAACGTCAAT
GATTCGTTCG GCCATCCGAC CGGCGACCGG CTGCTGCAGA AGGTGGCGGA CCGGCTGCGC
CAGCAGGTCG GCGGCAACGA CCTGGTGGCA CGGCTCGGCG GCGACGAATT CGCCATCGTG
CTCGGCGCGA TCAATTCGCC GAACGAGGCC AGCGATTTCG CCGCAAAGCT GATCGAGATT
CTCAGCGTGC CCTACGACAT GGACGGGCCG GAAGTGGTGA TCGGCGCCTC GATCGGTATC
GCGTTGTCGC CGGGCGACGG CGACGACGGC GAAGAGCTGT TGCGCAACGC CGACATGGCG
CTGTACCGCG CCAAGGCCGA GGGCGGCGGC ACCCACCATT TCTTCGAACG CGAGATGGAC
CGCCAGGCGC AGAAGCGCCG CGACATGGAG ATCGACCTGC GCCGCGCCTT CACCAAGGGC
GAGTTCGAAC TGTACTATCA ACCGCTGGTC AATCTCGCCG AGGACCGTAT CACCGGCTTC
GAATCGCTGC TGCGCTGGCG GCACCCCGAG CGCGGCATGA TCTCGCCGGC GGATTTCATC
CCGGTGGCCG AGGACATCGG GCTGATCGTC GGGCTCGGCG AATGGGTGTT GCGGCAGGCC
TGCGCCGAGG CGGTGAAGTG GCCCTCCGAC ATCAAGGTCG CGGTCAATCT GTCGGCGGTG
CAGTTTCGCT GCCGCAGTCT GGTGCAGGTG GTGATCGCCG CCTTGGCGCA GTCCGGGCTG
TCGCCGACGC GGCTCGAGTT GGAAATCACC GAATCGGTGT TTCTCGCCGA CACCGAGGCC
AATCTCGCCA CGCTGCATCA GCTGCGCGAA TTGGGGGTGC GGATTTCGAT GGACGATTTC
GGCACCGGCT ATTCGTCGTT GAGCTATCTG CGCAGCTTTC CGTTCGACAA GATCAAGATC
GACCGCTCCT TCGTGAAGGA TCTGGCGGAT CGGCCGGATT GTCTGGCGAT CGTGCGGGCG
ATCTCCGGGC TCGGCCGCAG CCTCAACATC ACCACCACCG CCGAAGGCGT CGAAACGCTC
GATCAGTTGG ACTGGCTGCG CGCCGAAGGC TGCAACGAGG TGCAAGGCTA TCTGTTCAGC
GCGGCGCGGC CGTCCGGCGA GATCAACGAT CTGTTGTTGC GGTTCGGCGC GCGGGCCTCG
GAAGCGGCGT GA
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| Protein sequence | MTAAKKLSSK FDTEKFGDIP VLKRKWRAAL KPGQTLPRYE DVMLGSLGRL ADHIVLLKGE
GASLAVSRSG RYIQEWLGQD AWDVPLGDLP ADCATALAEA AACGLQTGKP YLAVAHCVRA
GMVRTYDVVA LPTASRWGEK LIGVYVNERG AQYNLLDAIF SSTDDGILSL AAIRNADNRP
FDFQIVHLNE GASRLLGEPS TALQWSRLRA GGHLLCSPMM VARLLNVISS GNSDVLEIDR
GQQTIRLSAT AFGDVVSLTV SDVTSLKKRE DSFRLLFDNN PMPMWVFDAK TTEFLSVNDA
AVQHYGFERE SFLRMKLQDI WPEDEREVHL RSVLQVGDTH YSGRNWRHLR ADGSEIEVLT
FGRQVAFEGR DGFLVAVVDI TERRKAEAKI AFMAHHDGLT NLPNRGSYQE HLHQALELSR
RCNSKVAVLC VDLDLFKNVN DSFGHPTGDR LLQKVADRLR QQVGGNDLVA RLGGDEFAIV
LGAINSPNEA SDFAAKLIEI LSVPYDMDGP EVVIGASIGI ALSPGDGDDG EELLRNADMA
LYRAKAEGGG THHFFEREMD RQAQKRRDME IDLRRAFTKG EFELYYQPLV NLAEDRITGF
ESLLRWRHPE RGMISPADFI PVAEDIGLIV GLGEWVLRQA CAEAVKWPSD IKVAVNLSAV
QFRCRSLVQV VIAALAQSGL SPTRLELEIT ESVFLADTEA NLATLHQLRE LGVRISMDDF
GTGYSSLSYL RSFPFDKIKI DRSFVKDLAD RPDCLAIVRA ISGLGRSLNI TTTAEGVETL
DQLDWLRAEG CNEVQGYLFS AARPSGEIND LLLRFGARAS EAA
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