| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_3120 |
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| Symbol | |
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| ID | 3972769 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB18 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007925 |
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| Strand | + |
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| Start bp | 3461687 |
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| End bp | 3463990 |
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| Gene Length | 2304 bp |
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| Protein Length | 767 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 637926229 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_532981 |
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| Protein GI | 90424611 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3063] Tfp pilus assembly protein PilF |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCAGGA CAGCGGCCGC GACCACTTTG GCGCAGGCGA TCGCGCATTA CGGCGCCGGT
CGCCCCGAGC AGGCCGGCGC ACTCTGCGAC CAAATCCTCG GTGCAGATCC CGACCACGTC
GATGCGTTGC ACCTCTCCGC GGTGATCGCC TTCGCCGGCG ATCGCGCGGC GCAAGGCGCC
GCGCTGTTGT CCCGCGTGTT CGGCCTCGAT CCCGGCAACG CCCATGCCTA CGCCACGCTG
GGCGACGCCT TGGCGTTAAA GGGCGAACGC GAGGGCGCGG TGGCGGCGTT CCAGCAGGGC
GCCGCGCTGC GGCCGAACCA CGCCGGCTTG CATCTCAAGC TCGCCGCGGC ACTACAGGAT
CTGGGACGTC TCGACGAAGC CGCGGCGACC TGTCGCCGCG CCGTCGCGCT CGATCCCGAC
GCGACCCAAG CCCGGTTCAG GCTGGCCCGG ATCTTGACGG CACAGCGCGA CATGGCGGCG
GCCGCCGATG CCTATCGCGC ACTGATCGCG CGCGATCCGA CGTCGCACGA TGCCCTGCTC
AACCTCGGCA ACATCCTGCA GGACCAGGGC AAGCGCGCCG AAGCCATCGG CATCTATCGG
CGCGCGGTGG CGATCGAGCC TAGCTTCGCC GCCGGGCATC GCAATCTGGC GCTGGCGCTG
GCGCAACACC AGCAGCCGGA GGCGGCGTTG CAGGCCTGCC ATCGCGCGAT CGCGTTGCAG
CCCGAGGTGG TCGAGTCACA CATGGCGTTG GCCGAAATCC TGGAAGGTTT GGGACGCACC
GCGGAGGCGC TGGCGAGCTA TCGTGATGCG CTTGCGCTCG CACCGGACGA GACCGCGGTG
CTGTGCCAGA TCGGGATCGC GCTGCACCGG CTCGATCAAT TCGCCGAGGC GATCGACGTC
GCGACCGCCG CGCTGCGCAG CGCGCCAAAC CATGCCGACG CGGTGAAACT GCTCGGCCTC
GCGCTCTACA GCAGCGATCG CTTCGCCGAA GCGCTCGACG CCTACCGGCG GCTATCCGCG
CTGGATCCGG AGAATCCGGC GGTCCTCAAC GACATCGGCG CCTGCCTGTT CAAACTCGAG
CGCTACGACG CGGCGATCGC GGCCTGCGAA TCCGCGATCG CCATCAAACC CGATCACGCC
CCGGGGCTGA CCAATCTCGG CATCATCTTC GAGGCGCGCG GCGAGTTCGA GGCCTCCGCC
GCAATGCTGC GTCGGGCCAT CGCCGCCGAC CCGTTATTCG CCAAAGCCCA CGTCAACCTC
GCCGTCACCT ATAACGGACT GGGCCTGATC GATCAGGCGC TGGCATCCGC GCAGCGCGCC
GTCGCGCTGA CGCCGAACGA GCCGCAGGCC CGGCTCAACC ACGCGCATTT CCTGCTGTTG
AACGGCGACC TCGGCAACGG ATTCCGGGAA TACGAATGGC GGCGGCGCTG CAAGGAGGTC
GCCGCAAACC AGCAGCGCTT CAGCGTCCCG GAATGGCAGG GCGAGCCCCT CGCCGGCCGC
ACGCTGCTGC TGCATTCCGC CGACGGGCTC GGCGACGCCC TGCACATGGC GCGCTACGTG
CCGATCATCG CGGCGATGGG CGCAACGGTG CTGCTGCAGG TGCAGCCGGC GCTGGTGCGG
CTGCTGCACC ACAGCCTCGG CGTCACGGTG CTGGCGCGCG GCGAGAATCT ACCGCCGTTC
GATCTGCATC TGCCGATGCT CAGCGCGCCG CATGCGCTCG GCACCACGCG CGACAGCATC
CCTGCCCGCG TGCCCTATCT GTCGCCCGAA CCGGGCAAAC TCGCGTCTTG GCGCCGCGCG
CTCGCAGGCG ACGGTGCCGG CCTGAAGGTC GGCGTGGTGT GGGCCGGCAA CCCGAAACAT
TCCGCCGACG CGCAGCGCTC GCTCTCCGCC CTTGCCGTGC TGCCGGCTCT CTTGCTGCCC
GGCGTGCGGC TCTACAGCCT GCAAAAACAG CCGCCGGCGG CCGATCGGCC GGTGCTGGCC
GGGCTCGGCG ACGCCGTCAG CGATCTCGGC CCGGCGCTGG CCGATCTGTC GGACACCGCC
GCGGCGATCG CAGCACTCGA TCTGGTGATC GCGGTCGACA CCGCGGTGGC GCATCTGGCC
GGCGCGCTCG GCCGCCCCAC CTGGGTGATG CTGCCCTATG CACAGGACTG GCGCTGGATG
CGCGAACGCG AGGACAGTTC GTGGTATCCG ACCATGCGGC TGTTCCGGCA GCGCCGGCCG
CGGGATTGGG CCAGCGTGCT GGAAAGGCTG CCGGCCGACC TGGCGCGCGT CACGGCCGGC
GAGCGCGAGC GACTGCTGCC GTAA
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| Protein sequence | MSRTAAATTL AQAIAHYGAG RPEQAGALCD QILGADPDHV DALHLSAVIA FAGDRAAQGA
ALLSRVFGLD PGNAHAYATL GDALALKGER EGAVAAFQQG AALRPNHAGL HLKLAAALQD
LGRLDEAAAT CRRAVALDPD ATQARFRLAR ILTAQRDMAA AADAYRALIA RDPTSHDALL
NLGNILQDQG KRAEAIGIYR RAVAIEPSFA AGHRNLALAL AQHQQPEAAL QACHRAIALQ
PEVVESHMAL AEILEGLGRT AEALASYRDA LALAPDETAV LCQIGIALHR LDQFAEAIDV
ATAALRSAPN HADAVKLLGL ALYSSDRFAE ALDAYRRLSA LDPENPAVLN DIGACLFKLE
RYDAAIAACE SAIAIKPDHA PGLTNLGIIF EARGEFEASA AMLRRAIAAD PLFAKAHVNL
AVTYNGLGLI DQALASAQRA VALTPNEPQA RLNHAHFLLL NGDLGNGFRE YEWRRRCKEV
AANQQRFSVP EWQGEPLAGR TLLLHSADGL GDALHMARYV PIIAAMGATV LLQVQPALVR
LLHHSLGVTV LARGENLPPF DLHLPMLSAP HALGTTRDSI PARVPYLSPE PGKLASWRRA
LAGDGAGLKV GVVWAGNPKH SADAQRSLSA LAVLPALLLP GVRLYSLQKQ PPAADRPVLA
GLGDAVSDLG PALADLSDTA AAIAALDLVI AVDTAVAHLA GALGRPTWVM LPYAQDWRWM
REREDSSWYP TMRLFRQRRP RDWASVLERL PADLARVTAG ERERLLP
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