| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_3090 |
|---|
| Symbol | |
|---|
| ID | 3974041 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB18 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007925 |
|---|
| Strand | - |
|---|
| Start bp | 3430379 |
|---|
| End bp | 3432109 |
|---|
| Gene Length | 1731 bp |
|---|
| Protein Length | 576 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637926198 |
|---|
| Product | AMP-dependent synthetase and ligase |
|---|
| Protein accession | YP_532951 |
|---|
| Protein GI | 90424581 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG0365] Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.145452 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCACTT TCAAAGACGC AAGGGCGTTT CTGCTGGGGC AGCGCACCGA TTACGACACC
GCGGTGGCGG ATTTCCGTTG GCCCGATCAG GCGCCCTTCA ACTGGGCGCT GGACTGGTTC
GATGCCGAAC TCGCCGGCGA TCCCGCCAGC AAAGACCGCA CCGCGCTGTG GATCGTCGAC
GCCGCGAGCG GCGGCGAGAC CAGATTGTCG TTCGCGGAGT TGTCGCGACG CTCCAACCAG
ACGGCGAATT TCCTGCGCGC GCAGGGGCTC AAGCGCGGCG ATCATCTGTT GCTGCTGCTC
GGCAATGTGG TGCCGCTGTG GGAGATCATG CTGGCCGCGA TCAAGCTCGG CCTCATCGTG
ATCCCGGCGA CCACGCTGCT GACGCCCGAC GAATTGCGCG ACCGGCTGGA GCGCGGCCGC
GCCAAGTTGG TGGTGGCGGC GCCGGATCAG GTGGCGAAAT TCGCCAACCT CGGCGGCGCG
GATCTCGCGC GCGTCGTGGT CGGCGAGGCG CAAGCGGGCT GGCTGCCGTT TGCGCAAAGC
GCGGACTATC CTGGGAGTTT CGCGCCGGAT GCGCCGACCG ACCCGGACGA GCCGATGCTG
TTGTACTTCA CCTCCGGCAC CACGGCGAAA CCGAAGCTGG TGCGGCACAG CCAACGCAGC
TATCCGATCG GCGCGCTGTC GACGATGTAT TGGCTGGGGC TGCAGCCCGG CGACGTGCAT
CTCAACATCT CGTCGCCGGG CTGGGCCAAG CACGCCTGGA GCTGCCTGTT CGCGCCGTGG
AATGCGGGGG CCACGGTGTT CGTGGTCAAC CAGCCGCGGT TCGACGCCAA GAGCCTGCTG
GCGACGGTGG TGCGCTGCGG CGTCACCACG CTGTGCGCGC CGCCGACGGT GTGGCGGCTG
TTCATTCAGG AGAAACTCTC CGACTATAAG GTGGCGCTGC GCGAAGTCTG CGGCGCCGGC
GAACCGCTCA ATCCGGAAGT GATCGATCAG GTGAAGTCGG CCTGGGGGCT CACCATCCGC
GACGGCTACG GCCAGACCGA GACCACCGCG CTCGCCGGCA ATTCGCCGGG GCAAGTCGTG
AAGATCGGCT CGATGGGACG GCCGCTGCCG GGCTACCAGG TGATCATCAC CGATCCCGAC
GGCAAACCGG CGAAAGAGGG CGAGATCACC TTGAAGCTCG GGGCCGATCG TCCCGCGGGC
TTGATGCAAG GTTATCAGGG CGAGGGCGGC AGCTTGAGCG GCGCCGACGG CGAGGTCTAT
CGCAGCGGCG ACGTGGCGTT CGCCGACGAC GAGGGCTATC TCACCTTCGT CGGCCGCACC
GACGACGTGT TCAAATCCTC GGACTATCGG ATCAGCCCGT TCGAACTGGA GAGCATCCTG
CTCGAGCACG AGGCGGTCGC CGAAGCCGCG GTGGTGCCGT CGCCGGATCC GATTCGTCTG
GCGATTCCGA AAGCCTATGT GATGCTGGCG GCCGGCACCG AGCCGTCGCG CGACACCGCG
CTGTCGATTT TCCGCCATCT GCAGGCGCGG CTGTCGCCGT TCAAGCGGAT TCGGCGCATC
GAGATGGTCA CCGAGCTGCC GAAGACGATC TCCGGAAAGA TCCGCCGCGT ACATCTGCGC
CGGCTGGAGC GCGACGACGA CCGCAGTGAT GCGTTGCGCG GCCACGAATT CCGCGAAGAA
GAATTCGCCG AGTTGCAAAG CCCGCGCGGC GCCGCGCCGG CGGAGGGGTA G
|
|---|
| Protein sequence | MTTFKDARAF LLGQRTDYDT AVADFRWPDQ APFNWALDWF DAELAGDPAS KDRTALWIVD
AASGGETRLS FAELSRRSNQ TANFLRAQGL KRGDHLLLLL GNVVPLWEIM LAAIKLGLIV
IPATTLLTPD ELRDRLERGR AKLVVAAPDQ VAKFANLGGA DLARVVVGEA QAGWLPFAQS
ADYPGSFAPD APTDPDEPML LYFTSGTTAK PKLVRHSQRS YPIGALSTMY WLGLQPGDVH
LNISSPGWAK HAWSCLFAPW NAGATVFVVN QPRFDAKSLL ATVVRCGVTT LCAPPTVWRL
FIQEKLSDYK VALREVCGAG EPLNPEVIDQ VKSAWGLTIR DGYGQTETTA LAGNSPGQVV
KIGSMGRPLP GYQVIITDPD GKPAKEGEIT LKLGADRPAG LMQGYQGEGG SLSGADGEVY
RSGDVAFADD EGYLTFVGRT DDVFKSSDYR ISPFELESIL LEHEAVAEAA VVPSPDPIRL
AIPKAYVMLA AGTEPSRDTA LSIFRHLQAR LSPFKRIRRI EMVTELPKTI SGKIRRVHLR
RLERDDDRSD ALRGHEFREE EFAELQSPRG AAPAEG
|
|---|
| |