| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_3088 |
|---|
| Symbol | |
|---|
| ID | 3974039 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB18 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007925 |
|---|
| Strand | - |
|---|
| Start bp | 3428656 |
|---|
| End bp | 3429570 |
|---|
| Gene Length | 915 bp |
|---|
| Protein Length | 304 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637926196 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_532949 |
|---|
| Protein GI | 90424579 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.119324 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTATTC GATTTGACGG ACGCGTCGCC ATCGTCACCG GCGCAGGCAA TGGGCTCGGG
CGCGCGCACG CGCTGGGGTT GGCCGCGCGG GGCGCCAAAG TCGTCGTCAA TGATTTCGGC
GGCGCCCGCG ATGGCAGCGG CGGCTCGATG ACCGCGGCGG AGGCCGTGGT CGAGGAAATC
CGCGCCGCCG GCGGCATCGC GATGGCGGAC GGCGCCGACG TCTCCAATTT CGAGCAGGTC
AAGGCGATGG TGGCAATGAC CACCGCAGAG TGGGGGAGCG TCGATCTGTT GTGTGCCAAT
GCCGGAATCC TGCGCGACAA ATCCTTCGCC AAGATGGAGC TCGCGGATTT CGCCAAGGTG
ATCGACGTGC ATCTCAACGG CACGTTCTAT TGTTGCAAGG CGGTGTGGGA CGGTATGCGC
GAGCGCAACT TTGGCCGCAT CGTGGTGACC ACCTCGTCAT CGGGACTATA CGGCAATTTC
GGCCAGGCCA ATTACGGCGC CGCCAAAGCC GGCATCATTG GTTTAATGAA CGTGCTCGCC
GCCGAGGGCC GCAAGACCGA TATCCGCGTC AACACCATCT CGCCGACCGC GGCGACCCGG
ATGACCGAGG AACTGCTGCC GCCGCAGGCC TTGGCGCTGC TGAAGCCGGA ATCGATCACG
CCGGCGGTGT TGTATCTGTT GAGCGACGAC GCGCCGACCC GCACCATCAT CGGCGCCGGC
GCAGGCTCCT TCGCGGTGGT CAAGCTGATG GAGAGCGAAG GGCTCAACCT GCCGGAATCC
GACTGGACCC CGGACGCCAT CGCGGCGCAT TTCGCCGAGA TTTCCGACAT GTCGCAGGCG
CGCGCGCTGG AGGGCGCCTT CCAGCAGACC GAGAAATACG TCACGCAGGC TGCGGCGCGG
CTGGCGAAGG GGTAG
|
|---|
| Protein sequence | MTIRFDGRVA IVTGAGNGLG RAHALGLAAR GAKVVVNDFG GARDGSGGSM TAAEAVVEEI
RAAGGIAMAD GADVSNFEQV KAMVAMTTAE WGSVDLLCAN AGILRDKSFA KMELADFAKV
IDVHLNGTFY CCKAVWDGMR ERNFGRIVVT TSSSGLYGNF GQANYGAAKA GIIGLMNVLA
AEGRKTDIRV NTISPTAATR MTEELLPPQA LALLKPESIT PAVLYLLSDD APTRTIIGAG
AGSFAVVKLM ESEGLNLPES DWTPDAIAAH FAEISDMSQA RALEGAFQQT EKYVTQAAAR
LAKG
|
|---|
| |