| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_3080 |
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| Symbol | |
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| ID | 3972901 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB18 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007925 |
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| Strand | + |
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| Start bp | 3412788 |
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| End bp | 3418739 |
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| Gene Length | 5952 bp |
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| Protein Length | 1983 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 637926188 |
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| Product | putative DNA helicase |
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| Protein accession | YP_532941 |
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| Protein GI | 90424571 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1112] Superfamily I DNA and RNA helicases and helicase subunits |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.0715277 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACAACA TTGAGAACGA TAGCACCGAA GAAAATGCTG CGTCGATGGC TGGCGGGGGA
CCAAGTGATC CGTGTGTCGA TCTCGCAGTT GATATCGCCG CCACCCTCAC GTTTGCTTCG
CACCAAAATT CGATCCCGGT TATTCGATCG ATCCGGATCG AGAATCCAAC CGACGACGGA
ATCCAGAACG TCCGGCTCGA ATTGACGGCG AGCCCAGCCT TCGTGCGGAC AAAGACCTGG
ACCATAGACC GCGTCGGCGC CCAAAACGGC GTCACTTTGT CCGATCGGCG CGTGGATCTC
GATGCCGCCT ACCTTGCCGG TCTCGACGAG GCCGAGCGCG GCGACATCAC TTTACGACTG
ATGCAAGGCA CCGCCGTGCT CGCCGAGACG ATCATCCCGG TCCGGCTGCT GGCCCGGGAC
GAATGGGGCG GCGTCGCCGA TATGGCGCAA TTGCTGCCCT CCTTCGTGAT GCCGAACGAT
CCCGCGATCT TCCGGCTGCT GCGGTCGGCC GCCGAGCGGC TTGCGGAGCA TGGCCATTCC
TCGGCGCTCG ACGGCTATCA GAGCAACGAC CCGAATCGCG CCTACATGCT GACCGCTGCG
ATCTATTCGG CGATCGCAGG CCTAGGACTG CATTACGCGC AGCCACCGGC GAGCTTCGAA
TTGCGCGGCC AGAAGGTGCG CGGACCGAGC AAGATCGTAC AGGACGGTCT CGCCACCTGT
CTCGACACGA CACTGCTGTT CGCCGCGGCG ATCGAGGCCG CCGGCCTGAA TTCCGTGGCG
ATTCTGTTGG ACGGCCACGC TTTCGTCGGC GTCTGGCTGG TGAAGCGAAC GCTGCCGCGG
ACGGTCGAAT GCGACGTCGC TGAGATCCGC AAGGCGATCG CACCGCGCGA ACTCGTGGTG
TTCGAGACCA CCGGCGTCAC CCATCGGCCG GCGATGACGT TCGAGCAGGC GATCAAGCTC
GGCGAAACCA AACTCGACGA AGGCGCTCCG CAACGTTTCG CGTCGGCCAT CGACATCGCC
CGCTCGCGCT CAGGCGGCAT CATGCCGCTG GCCTCGCACC AGACCGCGGA TCCGGACTCT
GCCGCCGATG ACGACGCTCC ATCGGACATC GGGCTGCCTG CCGTGCCGGA TATCGCGATG
CCCGCCGACG CCGTCGAGCA GAAGCCGAGC AGCCCGGCCG GTCGCATCGA GCGTTGGCGG
AATCGGCTGC TCGATCTCGG CCTGCGCAAT CGGCTGCTGA ATTTCTCCGA CAGCAAACGC
ACCGTCGCCT TCGTGTGTCC TGACATCGGC TATCTGGAAG ACCGGCTCGC CGATGGTATC
GCGATCAAGT TGATCTCGTT GCCCGAGCAG AATCCGTTGG GTGAGCGCGA TCCCTCTTTG
CATCGCGAGA CCCGCGGGCA GGATCTGCAC CGCGGCTTCG CCGCCGAGGC GCTGCGCCGC
GATGAATTAT CATCAATGCT GGAGCCGAAG GAGCTGTTCG CACGGCTCAC CGCGTTGTAC
CGCCAGGCCA AAAGCGATAT CACCGAGGGC GGCACCAACA CGCTCTACCT CGCGGTCGGC
GTGCTGAAGT GGAAGAAGAA GCCGACCGAC GAGCGGGTCT ATCGCGCGCC GTTGTTGCTG
CTGCCGGTCA AGCTGGAACG CAGCGGCGCG TCGGATCGCT TCCGGCTGCG CTTTCATGAA
GACGAGCCCC GGCTGAACGC GACGCTGCTG CAGTTCCTCA AGGTCGAATT CGACCTCAGT
CTGCCGGATT TTCGCGATGG CCTGCCGCAG GACACGAGTG GCATCAACGT CGCACTGCTG
TTCGAGCAAA TGCGCCGCGC TGTGCGCGAC GCGCCGGGCT TCGAGATCGC CGAGGATATC
GCGCTATCGA CGTTCTCCTT CGCCAAATAT CTGATGTGGA AGGATCTCAC CGACCGGGTC
GATTCGCTGC GTCAGAACCG CGTCGTCAGC CACCTCATCG ACAATCCCGA ACACGCCTTC
CCGGGCGCCG CAGAAACGTT CCCGGACGAG AACGAGATCG ACCGCAACTT CTCGCCCGCC
GATATCGTGA TGCCGCTGCC GGCGGATTCC TCGCAGATCG CAGCCGCCCT GGCCGCGACG
CAGGACCGCG ACTTCGTCAT CGTCGGTCCG CCCGGCACCG GCAAGAGCCA GACCATCGCC
AACATGATCG CGAGCTGCCT CGCCGCCCGC AAGACCGTGC TGTTCGTCGC CGAGAAGACC
GCCGCTCTCG ACGTGGTCTA TCGAAGGTTG CGCGAACATG GCCTCGGCGA TCACTGCCTC
GAACTGCATT CCAGCAAGGC CGACCGCAAG CATTTCTTCG CCCAACTCAA GAACTCATGG
GAGAAGCGCG GCGACGCCAA TGCCTCGCAA TGGGTCACGC TGAACGACCG GCTGCAGATC
CGCCGCGACG AGTTGAACGC CTACGCCAGG GCGCTGCATC GCAAGTCGCC AAACGGGCTC
ACGCCCTATA TCGCGATGGG CATCGCGGCC GCCGGGCACG ACAGGCACGC GCCGGCGCTA
CGCTGGCCGT CGATCGGCGC TCATGACGCC GTCGGCTATC GCCAGTTGGA CGATCTGGCC
AAGCAGCTCG GCCAGACCTT TGCCGCCGTG ACCACGCGTC CGGTGCTGGC GCTGGTCCAT
GTCGAGGAGT GGACCGGAGC GTGGCAGGAG CAGTTGTTAA AGGCTGCGCG CAATCTCGGC
CGCGCCGCTG CCCAAGCGCA AGCCGCGTTG GCGAAGCTGA GCGCGCGCTT CGGTCTTTCC
GACGTCGCAG ATACCAGCAT CGACGGAGTC GGCTATTTCG CCGACCTGGC ACGCAATGTG
ATCGCCACCG CCGGAGCCGA CTACACCATC ATCCTGCATA AGGATTTCGC GACGCTGACC
CGCGCGATCG GCGAACTCGA AAATGCCATC ACCTCCTACC GCGACGGCGA GACCGGACTG
TCGCGGCGCT ATCCGCCCGA CGCGGTGGCG CGGATTCCGA TCGATGAACT GGACCGCGAT
TGGCGTCAGG CGAACGCGTC GATGTGGCCG AAATCCTGGT TCGCGGCGCG CCGGGTTCGG
CGGCTGCTCG GCTCTTATGC CGGCGCCAAG GCCGCCGATC CCACCACCGA TTTGCCTCGC
TTGCGCGCGA TGCAAGCCAC CCACCACGCG ATCGCCGGCA ATGCGATTTC CTCGACACCT
CTCGCATTTG CCGGGCTCGA CACCGATTGC GACGGGCTGC GCCGACATCT GCAAAGCGCC
GAACGATTGC GGAACTCGCT GGTGCAGCTC GGCGAATTCG CCGGCGACGT GTCGCGCGTG
GCAGCGAGCA TTGCCGCTGG TCTGAAGGGC CAGGCCAATC AGCCGCAGAT CGCCGCCGGC
AAGGATTTCA TCGCCCGGTA TGAGGCGCTG ATCGAGACCA TCGCGGCGTT CGAAACCTGC
GCCGGGCTGC CGCTCGGAGA CCGCGCCGCC GACGATTTCC TCGGCCGCGT GTCGCAGCAG
ATGGACGAAC TCGAACAATC GCACAACCTG TTTCGCGACT GGTCGTCATG GTGCGCGGTG
CGCGCGCGCG GCATCGCGCA AGGCCTGGCG CCGTTGGTTG CCGATCTGGA AAACGACGCG
GTTGCCCCCG GCGACTCCCA GACGGCGTTT CGCCTCGGCT ATGCCAGGTG GTGGCTGCCG
CTTGCGATCG ACGATAGCCG CGAACTGCGC AGCTTCCGCC GCTTTCAGCA CGAGCACGCC
ATCACCGACT TCCGCGAGAT CGACGACCTG GTCCGCGCAC ATGCGTCGCA GAAGGTGGTG
AGTTCGCTGG TCCACGGCCT GCCGGCGGCC GACGCGGTGC CGCGCAAATC GGAGCTCGGC
GCGTTGCGCC ACCAGATGGG GTTGCAACGT CCCAGCGCCT CGATCCGCGA CATGATCAGC
GCGATGCCGG AGAGCTTCGC CAAGCTGGCG CCTTGCGTGC TGATGTCGCC GTTGTCGATC
GCGCAGTATT TGCCGACGCA GCAGACGCTG TTCGACGTCG TGATCTTCGA CGAGGCATCG
CAGATCGCGA CCTGGGACGC GGTCGGCGCC ATTGCGCGCG GCAGGCAGAC CATCATCGTC
GGCGATCCCA AGCAATTGCC GCCGACAAAT TTCTTCGGTC GCAACGACGC CGATGGCGGC
GACGTCCCGC AGCACGAACA AGATCTCGAG AGTATTCTTG ACGAGGCGCA GGCCTCCGGG
CTGCCGACGC GGCAGCTGCG CTGGCATTAC CGTAGCCGTC ACGAGTCGCT GATCGCGTTC
TCCAACTGGT ACTATTACGG CAACCACCTC ATCACCTTCC CGAGTCCGGT CACCGAAGAC
CAGGCGGTGT CGCTGACCTT CGTGCCGACC GGCGTCTACG GCCGCGGCAG CAGTCGCAGC
AACCTCGAAG AAGCCCGCGC CATCGTCGCC GACATCGGTG CCCGACTTCG GTCATGGCTG
GCGTTGCCGG AGCCGCAGCG GCCAACGCTC GGCGTCATCA CCTTCAACCA GCCGCAGCAG
GAACTGATCC TGGATTTGCT TGATGATACA AGGCGCGGCA ATCCGGCACT GGAATGGTTC
TTCGCAGAAG ACCGCATCGA GCCGGTGATC GTCAAGAACC TGGAAAACAT CCAGGGCGAC
GAGCGCGACG TCATTCTATT TTCGATCACC TATTGCCGTG ACGCCGCCGG TCGGCTGCCG
ATGACGTTCG GTGCGATCAA TCAGGACGGC GGCGAACGCC GGCTCAACGT GGCGGTGACG
CGGGCGCGGC GCGAGTTGAA GGTGTTCTCT GGAATCCGCG CCGACGACAT CGATCTCGGA
CGCAGTCGTG CGATCGGCGT GCAACATCTC AAAGCCTTCC TCGATTATGC GGTGCGCGGC
GCGGTCGCGC TGCCGGCACA GGACGCCGGC TCGCAGGGCG AGATGGAGTC GCCGTTCGAG
GAAGCCGTCG CGGCACAGCT CGAACGCCGC GGCTGGCAGG TCGTGCCGCA AGTCGGCGTA
TCCGGATTCC GCATCGACCT CGGCGTCCGC CATCCCGACC ACGCCGGGAT CTATCTCGCA
GGCATCGAAT GTGACGGCGC GACCTATCAT AGCTCGGCGA CCGCGCGCGA CCGCGACAAG
GTGCGCGAGC AAGTGTTGTG CGGTCTCGGC TGGACGATTC TACGCGTATG GTCGACCGAC
TGGTGGTTCA ACGCCGCGGA GGCAATCGAG CGGCTGCAGC AAGGGCTTGA GTCCGCCCTG
ACGGAAAGCC GCGCCAGCCG CGCGGAAACC AAGGCCGCGG ACTCACCGGA TCCGATTGAC
GAGTCCCAAA TCACCGCCGC TGGAGGCTTA GAGAACGACG ATTTGGCCGG ATCCGACGCG
CCGAAGGAAA CCGAGTCGGT CGCCATAGGC ATCGCGGCTT TGAACCTGCC TGAGATTCGC
ATTGCCTCTT TGGATCTGCC CGTTGAAGCA ACCCCAGACA GTCAAGCCAA CCCAACATTC
GCAATCACCG ACCTTTCCTG TTTCAAGGCG GACCCCGACT GCTTCTTCGA GTTTTCCTAC
CGGCCAACGC TTCAAGCGAT GGTCGACGCC ATCATCGAGC AGGAGGCCCC GTTACGCGAA
GACGTGCTGG CCCAACGCAT CGCGCGCGCG CATGGCTGGC TGCGCACCGG CGGCCGGATT
CGCGCGCAGA TCGATCTGCA TCCGCGCAAG CTCGACCGCA CCGAAGAGAC CTCCGGCGTG
TTTCTTTGGA AGCCGGGTAC GATTTTATCC CGGGTGCCAT TCCGCGCGGC ACTCGGACCG
GAACATCGGC GTCCCTTGTC CGATATCTGT ATCGCCGAGC TCGCAGATTT CGTCATCGCA
CATCGGACAG CACTGCAGGA GGACGACCCA CCGTTGGTCT ATGCCAGGCT GCTGCAAGTC
GAACGGCTAG CCGCATCCTC GCGTGAACGC CTCAATGAAG CGATCGCTCG GGCCGAGACG
CTGGGGATCT GA
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| Protein sequence | MNNIENDSTE ENAASMAGGG PSDPCVDLAV DIAATLTFAS HQNSIPVIRS IRIENPTDDG
IQNVRLELTA SPAFVRTKTW TIDRVGAQNG VTLSDRRVDL DAAYLAGLDE AERGDITLRL
MQGTAVLAET IIPVRLLARD EWGGVADMAQ LLPSFVMPND PAIFRLLRSA AERLAEHGHS
SALDGYQSND PNRAYMLTAA IYSAIAGLGL HYAQPPASFE LRGQKVRGPS KIVQDGLATC
LDTTLLFAAA IEAAGLNSVA ILLDGHAFVG VWLVKRTLPR TVECDVAEIR KAIAPRELVV
FETTGVTHRP AMTFEQAIKL GETKLDEGAP QRFASAIDIA RSRSGGIMPL ASHQTADPDS
AADDDAPSDI GLPAVPDIAM PADAVEQKPS SPAGRIERWR NRLLDLGLRN RLLNFSDSKR
TVAFVCPDIG YLEDRLADGI AIKLISLPEQ NPLGERDPSL HRETRGQDLH RGFAAEALRR
DELSSMLEPK ELFARLTALY RQAKSDITEG GTNTLYLAVG VLKWKKKPTD ERVYRAPLLL
LPVKLERSGA SDRFRLRFHE DEPRLNATLL QFLKVEFDLS LPDFRDGLPQ DTSGINVALL
FEQMRRAVRD APGFEIAEDI ALSTFSFAKY LMWKDLTDRV DSLRQNRVVS HLIDNPEHAF
PGAAETFPDE NEIDRNFSPA DIVMPLPADS SQIAAALAAT QDRDFVIVGP PGTGKSQTIA
NMIASCLAAR KTVLFVAEKT AALDVVYRRL REHGLGDHCL ELHSSKADRK HFFAQLKNSW
EKRGDANASQ WVTLNDRLQI RRDELNAYAR ALHRKSPNGL TPYIAMGIAA AGHDRHAPAL
RWPSIGAHDA VGYRQLDDLA KQLGQTFAAV TTRPVLALVH VEEWTGAWQE QLLKAARNLG
RAAAQAQAAL AKLSARFGLS DVADTSIDGV GYFADLARNV IATAGADYTI ILHKDFATLT
RAIGELENAI TSYRDGETGL SRRYPPDAVA RIPIDELDRD WRQANASMWP KSWFAARRVR
RLLGSYAGAK AADPTTDLPR LRAMQATHHA IAGNAISSTP LAFAGLDTDC DGLRRHLQSA
ERLRNSLVQL GEFAGDVSRV AASIAAGLKG QANQPQIAAG KDFIARYEAL IETIAAFETC
AGLPLGDRAA DDFLGRVSQQ MDELEQSHNL FRDWSSWCAV RARGIAQGLA PLVADLENDA
VAPGDSQTAF RLGYARWWLP LAIDDSRELR SFRRFQHEHA ITDFREIDDL VRAHASQKVV
SSLVHGLPAA DAVPRKSELG ALRHQMGLQR PSASIRDMIS AMPESFAKLA PCVLMSPLSI
AQYLPTQQTL FDVVIFDEAS QIATWDAVGA IARGRQTIIV GDPKQLPPTN FFGRNDADGG
DVPQHEQDLE SILDEAQASG LPTRQLRWHY RSRHESLIAF SNWYYYGNHL ITFPSPVTED
QAVSLTFVPT GVYGRGSSRS NLEEARAIVA DIGARLRSWL ALPEPQRPTL GVITFNQPQQ
ELILDLLDDT RRGNPALEWF FAEDRIEPVI VKNLENIQGD ERDVILFSIT YCRDAAGRLP
MTFGAINQDG GERRLNVAVT RARRELKVFS GIRADDIDLG RSRAIGVQHL KAFLDYAVRG
AVALPAQDAG SQGEMESPFE EAVAAQLERR GWQVVPQVGV SGFRIDLGVR HPDHAGIYLA
GIECDGATYH SSATARDRDK VREQVLCGLG WTILRVWSTD WWFNAAEAIE RLQQGLESAL
TESRASRAET KAADSPDPID ESQITAAGGL ENDDLAGSDA PKETESVAIG IAALNLPEIR
IASLDLPVEA TPDSQANPTF AITDLSCFKA DPDCFFEFSY RPTLQAMVDA IIEQEAPLRE
DVLAQRIARA HGWLRTGGRI RAQIDLHPRK LDRTEETSGV FLWKPGTILS RVPFRAALGP
EHRRPLSDIC IAELADFVIA HRTALQEDDP PLVYARLLQV ERLAASSRER LNEAIARAET
LGI
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