| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_3061 |
|---|
| Symbol | |
|---|
| ID | 3973379 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB18 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007925 |
|---|
| Strand | - |
|---|
| Start bp | 3392115 |
|---|
| End bp | 3393608 |
|---|
| Gene Length | 1494 bp |
|---|
| Protein Length | 497 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637926171 |
|---|
| Product | integrase catalytic subunit |
|---|
| Protein accession | YP_532924 |
|---|
| Protein GI | 90424554 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.565322 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.0599133 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACCATC GTCGAACCCA TCCTCAGCAC ACTGCCGCCG CCAAAGCGGG AATCAGCGAA
CGCTCGGCTC GTCGGATCGA TCGCGATCCA ACCTTGCCAT CGCAGCGCAA GACACCCCGA
GGTTATCGGA CCCGTCCCAA CCCGTTCGAC GGCGTTTGGG AAGCCGATAT CGTGCCGCTG
CTGCAATCGA TGCCGTCGCT GCAGGCCATC ACCATTTTGC GCGAGCTGCA GCGGCGTCAT
CCCGGCCGCT TTCCCGACAG CCATTTGCGA ACCCTGCAGC GCCACATGCG GCGGTGGAGC
GCACTCGCCG GCCCCGAGCG CGACGTCATC TTCCGTCAGG AGCATCCGCC CGGTGCGCAG
GGCCTTTCCG ACTTCACCGA TGCGGGCGAG CTTGGTGTGA CGATGGTTGG GCTCGCCTTT
CCGCATCGCT TCTATCACTT CGCGCTGGCC CATTCGCAGT GGGAGTACGC CCGCGTGGTC
GAGGGCGGGG AAAGCTTCTC GGCGCTTGCC GAGGGGCTCC AGAACGCGCT CTGGCTGCTC
GGGGGGGCCC CGCGCGAGCA TCGCACCGAC AGCCTCTCGG CTGCGTTCAA GAACCTCTCG
GAGGAGGAGG ACTTCACGCG CGCCTATCGT GAACTTTGTG ACCATTACGG CATGGCGGCG
ACCCGCAACA ATCGCGGTGT CAGTCATGAG AACGGCTCGA TCGAAAGCCC GAATCGCCAC
CTCAAGAAGG CGCTCGATCA GGCGCTGACG CTGCGCGGTA GCCGTGACTT CGATACTCGG
GTGGCCTATC AGGCATTCAC CGACGACATC GTCGGCCAAC GCAATGCCGC CCGCGACCAG
GCCTTCGCAG CCGACCGCGC CGCCCTGCGG GCGCTGCCGC CGCGCCGCAC CACGGACTTC
AGCGAGGCTG CCGTGGTGGT CACGTCCTCC AGCATGTTCT GTCTGCGCAA GGTGTTCTAC
ACGGTGCCGT CGCGTTTGAT CGGCCATCGC CTCAAGGTGC ACCTCTACGA CGATCGGCTC
GACTGCTTCC TCGGCTCGAC GCAGGTGCTC GTGCTGCCGC GCGGCCGGGT GCCGCGGGGG
GCCCAACGCG GACACGTCGC CGACTACCGG CACGTGCTGC CGAGCCTTCG GCGCAAACCC
CAGGCCTTGC GCAACCTGGT ATGGCGTGAC GCGCTGTTCC CGCGGCCGGC GTTCCGCCGG
GCCTGGGACA CGCTGGTCGA GCGAGGCCCG ATCGACCGGG CTTGTCGCAC CATGGTGGCG
TTGCTCGACA TCGCCTATTG CAGCGGTTGC GAAGCAGAAC TCGCCGCGCA TATCGACAGC
GTGCTCGATC TCGGCCACCT GCCGGATCCC AACGCCCTGC GGGCTGTGTT CAGCCGCGAT
GCCGCGGCTC AAAACGGCGG GGCGGCATTG CCCACGGTGG CCGTCACGAT GCCGGCCGCG
TTGATCTACG ACGTGCTGCT GTCCAGCGTC CACGGCGAGG TGTCGTCATG CTGA
|
|---|
| Protein sequence | MDHRRTHPQH TAAAKAGISE RSARRIDRDP TLPSQRKTPR GYRTRPNPFD GVWEADIVPL
LQSMPSLQAI TILRELQRRH PGRFPDSHLR TLQRHMRRWS ALAGPERDVI FRQEHPPGAQ
GLSDFTDAGE LGVTMVGLAF PHRFYHFALA HSQWEYARVV EGGESFSALA EGLQNALWLL
GGAPREHRTD SLSAAFKNLS EEEDFTRAYR ELCDHYGMAA TRNNRGVSHE NGSIESPNRH
LKKALDQALT LRGSRDFDTR VAYQAFTDDI VGQRNAARDQ AFAADRAALR ALPPRRTTDF
SEAAVVVTSS SMFCLRKVFY TVPSRLIGHR LKVHLYDDRL DCFLGSTQVL VLPRGRVPRG
AQRGHVADYR HVLPSLRRKP QALRNLVWRD ALFPRPAFRR AWDTLVERGP IDRACRTMVA
LLDIAYCSGC EAELAAHIDS VLDLGHLPDP NALRAVFSRD AAAQNGGAAL PTVAVTMPAA
LIYDVLLSSV HGEVSSC
|
|---|
| |