Gene RPC_3043 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPC_3043 
Symbol 
ID3973496 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB18 
KingdomBacteria 
Replicon accessionNC_007925 
Strand
Start bp3368916 
End bp3370712 
Gene Length1797 bp 
Protein Length598 aa 
Translation table11 
GC content64% 
IMG OID637926154 
ProductABC transporter related 
Protein accessionYP_532907 
Protein GI90424537 
COG category[V] Defense mechanisms 
COG ID[COG1132] ABC-type multidrug transport system, ATPase and permease components 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value0.910106 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATCGTTG ATCTCGGCTT CGATCTCGCG GGACGACGCG AGCCTCGCCT AAAGCTCGGA 
TTTGCTCTCG GCGTGGCGTC GGCCTTTTGC GAGGCGCTTC CCTACGTCGA ACTCGCACGC
GTCATCGTCG CAATCCTGGC TGGCCAGGCG AGCATCGGGC TGGTGATCGA GGCCCTTGTC
GTCGTCGGTT CCGCCACATT TGCGCAGGCC TGGCTGCGGT CGAACAGCAT CGTCGTCAAT
TTCGTCGCGA CCTATCGTCT GGTGGCGGAC GCGCGACTCC GGATCGCGGA CCATCTGAGC
CGTCTGCCGA TGGGGACGCT CAGCGAAGCG CGACGCTCCT CCATCGCGGA ACTGCTGACG
AGTCGCTTCA CGCTCTATCA AGAACTGATC ACCCACGCCT GGGGATTGAC GATCGTCAAC
GTTTCGCTGC CGCTGTTCCT GTGGCTGATC ATGTTGTGGG CCTCCTGGCC GCTTGCCTGC
ATTGCGGCGG TGATGGTGCC GGTCACGATC ATCGTCGTCC CATGGACATG GCGATTGATC
GGCCGGGCCT CGGAACGCGT GCAAGGCGCG CAGACTGACT TGGTCGCCGG ATCGATCGAA
GCCATCGAAG GCGCCCGTGA CCTCCGCCAA TTCGATGGCG CGGGACAACG TGCGGAACTT
CTCCATCAGA CGATCGACCG CCTCGGGCGC GAACAGCTGC GGCACGAGCT CGCGCCGGCT
CCGGCGTTGA TGAGCTTCAA TATCCTGAGC CAGCTAGGCT TCACCATCGC GACCCTGGCG
GGAGCGTTTC TGTTGGCGCG GGGCATGCTC GACGTCGAGC GCTTCATCAT GTTTCTCATC
GTCGGCGTCC GGTTCGCTCG AGCCCTGGCA GATCTCGGCA TCCAGATCGC CGAACTCCGG
GTCGCGCAGA TCACCTTGAC TCAGATCCGC GCACTCGTGC AGTCCACCCC GATGCCGATG
CCCGAGACCG GACTGCTTCC GAAAGATGCA TCGATCGCGA TCGAAGGTGT GTCGTTCTCC
CATAAGCGCG AGGACGGCCA GGACGTGGTG CTGCGCGACA TCGACGGATT CATCCCTTCG
GGGGCCCTGG TCGCGATCGT CGGCCCATCG GGCTCGGGGA AATCCACGCT GGCCCACCTG
GTCGGTCGTC TCTGGGACGT CGGCTCCGGC TCCATCCGCA TCGGTGGTGT CGACGTGCGC
GAGATGACTT CGGAGGTGCT CTGTCGGACG GTCGCAATGG TGTTGCAGGA TGTCGCGCTG
TTCGAAGGAA CGATCGCCGA CAACATCCGA CTCGGCCGTC CGGACGCGAC CGACGCGGAG
GTCCAGGCGG TCGCTCGGGC CGCGCGCGCC CACGACTTCA TCGTCGCTTC TCCCGATGGC
TACCAGACGA TGCTCAATGC GACCGGCACC GATCTATCCG CGGGAGAGCG CCAGCGGATC
TCGATCGCGC GCGCGCTACT GAAAAATGCC AGCGTCCTGG TACTCGACGA GGCGACCGCT
CAGGTCGATT TCGAGAACGA AGCCGAGATC CAAGCCGGCC TCGCCGAACT CACGCGAGAT
CGAACGGTCC TGTTCATCGC GCACCGCCTC TGGACCGTGA CGGAAGCCGA TGAAATCTGG
GTCCTCGACC AGGGCCGGAT CGTCGAGCGC GGCACACATC AAGTTCTGTT GGAGCGGAAA
GGCCGCTATC GCGAGCTTTG GGATGCTCAG CAGCAGGCGC GATCCTGGCG CCTGGGCGCC
CGTTCAGAAC CCCAGCGTGG TTTAGCCTGC CCGGATCGAT CCGCATCGAG CTCGTGA
 
Protein sequence
MIVDLGFDLA GRREPRLKLG FALGVASAFC EALPYVELAR VIVAILAGQA SIGLVIEALV 
VVGSATFAQA WLRSNSIVVN FVATYRLVAD ARLRIADHLS RLPMGTLSEA RRSSIAELLT
SRFTLYQELI THAWGLTIVN VSLPLFLWLI MLWASWPLAC IAAVMVPVTI IVVPWTWRLI
GRASERVQGA QTDLVAGSIE AIEGARDLRQ FDGAGQRAEL LHQTIDRLGR EQLRHELAPA
PALMSFNILS QLGFTIATLA GAFLLARGML DVERFIMFLI VGVRFARALA DLGIQIAELR
VAQITLTQIR ALVQSTPMPM PETGLLPKDA SIAIEGVSFS HKREDGQDVV LRDIDGFIPS
GALVAIVGPS GSGKSTLAHL VGRLWDVGSG SIRIGGVDVR EMTSEVLCRT VAMVLQDVAL
FEGTIADNIR LGRPDATDAE VQAVARAARA HDFIVASPDG YQTMLNATGT DLSAGERQRI
SIARALLKNA SVLVLDEATA QVDFENEAEI QAGLAELTRD RTVLFIAHRL WTVTEADEIW
VLDQGRIVER GTHQVLLERK GRYRELWDAQ QQARSWRLGA RSEPQRGLAC PDRSASSS