| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_3024 |
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| Symbol | |
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| ID | 3973631 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB18 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007925 |
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| Strand | - |
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| Start bp | 3323123 |
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| End bp | 3324214 |
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| Gene Length | 1092 bp |
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| Protein Length | 363 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 637926135 |
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| Product | secretion protein HlyD |
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| Protein accession | YP_532888 |
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| Protein GI | 90424518 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.756641 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACAACGA CTGCAGAACA CACCGGCATG TGGGCCGCCT CCATCGTAGT TCTGCTAGCG
ATTCACTCCG CGGCTCACGG ACAGGATTCC TCGGCCGCGA TGACGGTGGT CGCGAGGCCG
GTGGAAAAAT CCGAGATCAC CGGCAGCATC ACCGCGACAG GCAACGTGGT CGCCTGGCGC
GAGATTCCGA TCAGTTCGGA AGTCGGCGGC CTTGCGATCA CGCAGATCGC GGTCGACGAG
GGAGATGTCG TCGCGCAGGG CCAAGTCCTG GCGCGGCTCA ATCAGGATCT GACGACGGCC
GCGCTGGCGA AACAAAAGGC TGCGATCGAC GAATTGCAGG CAAGCCTTGC GATTGCCCGA
TCCGACGCCG CACGCGCTCG CGCCGTCTCG TCCGGTGTGA TCAGCGCGCA GGTGATCGAG
CAACGCGAGA CCCTGGTCAA GACGACCGAG GCGAAGCTGC AGGCCGCGCA GGCGCAGCTC
GACGACGCCG AAGCGCGGCG GCGCCAGACG GTGATCGTCG CGCCCGCCGC CGGGACGATC
GCCTCGAGGT CGGTTGCGAT CGGCCAGGTG GTTCAGGCCG GCGTCGAGAT GTTCCGGCTC
ATTCAGGACG ACCGCGTGGA GGTCGATGCG CGGGTGCTGG AGCAGGATCT GATAGCCGCC
GCCGCCAGGC AAACCGCGAC GATTATCGGC CCGAGCGGCA AAGCCGAGCA GGGTGTCGTC
CGAGCGGTCT CGCCGATCGT CGATCCGAAG ACCCGTCTGG GGACCGTCCG CATCGCGCTC
CCTCGCGATA CGCCGCTGAA GCCCGGCATG TTCGCGCGCG TCGCCATCGC GGTCGAGAGC
AAACTGGTGC TGACCATTCC GCTGAAGGCG CTGGTCTGGC GCGAAGCCAG GGCGCACGTC
TTCAAGGTCG GCCGCGACAA TCTGGTGTCG CTCACCGAAG TCCGCATCGG CCGCGGGGCG
ACCGACGATG TCGAAGTGCT GCGTGGTCTC GACGAGGGAG ACCGCATCGT TACCCAAGGC
GCCGGGCTTC TCAACGACGG TGACGTCGTG AACGTTCAGA CCGCGGCGGC CAAGCGCGGT
TCGGTCCGAT GA
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| Protein sequence | MTTTAEHTGM WAASIVVLLA IHSAAHGQDS SAAMTVVARP VEKSEITGSI TATGNVVAWR
EIPISSEVGG LAITQIAVDE GDVVAQGQVL ARLNQDLTTA ALAKQKAAID ELQASLAIAR
SDAARARAVS SGVISAQVIE QRETLVKTTE AKLQAAQAQL DDAEARRRQT VIVAPAAGTI
ASRSVAIGQV VQAGVEMFRL IQDDRVEVDA RVLEQDLIAA AARQTATIIG PSGKAEQGVV
RAVSPIVDPK TRLGTVRIAL PRDTPLKPGM FARVAIAVES KLVLTIPLKA LVWREARAHV
FKVGRDNLVS LTEVRIGRGA TDDVEVLRGL DEGDRIVTQG AGLLNDGDVV NVQTAAAKRG
SVR
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