Gene RPC_3023 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPC_3023 
Symbol 
ID3973630 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB18 
KingdomBacteria 
Replicon accessionNC_007925 
Strand
Start bp3320043 
End bp3323126 
Gene Length3084 bp 
Protein Length1027 aa 
Translation table11 
GC content65% 
IMG OID637926134 
Productacriflavin resistance protein 
Protein accessionYP_532887 
Protein GI90424517 
COG category[V] Defense mechanisms 
COG ID[COG0841] Cation/multidrug efflux pump 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value0.904124 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACAACA TCTCCAGTTG GGCGATCCGT CATCCGGTGC CGACCACGAT CCTGTTCGTG 
CTGTTGACGT TGTCCGGCCT GGTGGGGTTT TCGCAGTTGC GGCTCAACAA CATGCCGGAC
ATGGACATCC CCACCGTGAC CGTCACCGTC CGCTGGGCCG GAGCCGCGCC GACGGAGATC
GAAACCCAGA TCACGCGATT CATCGAAGAC AGTGTTGCGG GATTGGGCGC CGTCGACCAC
GTTCGCTCGA CCATCAACGA AGGCCTGTCG ATGACGATGG TCGAGTTTGC GATCGGCACC
GACATCGACC GTGCCAGCAA CGACGTTCGC GATGCCGTCG TGTCGATTCG ATCGAAGCTG
CCGCAGGCGG CGCTCGATCC GATGATCCGC CGTGTCGACG CCACCGGGCA GGCCATCCTC
ACTTTCGTGG TCGATGCGCC GGGTATGGCC CCCGACGATC TGAGCTGGCT GATCGACAAC
GACGTCGCCA AGGCCGCGCT CGCGGTGCCC GGCGTGGCAC GGATTTCGCG ATCCGGCGGC
GTCGACGCCG AGATCACGAT CAAGCTCGAC CCCGATCGGT TGATGGGGCT CGGCCTGACG
GCCGTCGAGG TTTCCGACCA AGTCAGGGCG CAGACCATCA CCGAGCCGGG CGGCCGCGCG
GCGCTGGGCG GAATGGAACA GGCGATCCGC GCGCTCGGAA GCGTCGCGGA CGTCGGGCGG
CTCGAGGATC TGCGCATCGC CTTCAGCGAC GGACGCAGCG TCAAGCTCTC CGAGCTCGGC
AGCGTCGAGC GATCCTGGGC GGAGCCTCGC CAGAGGGCGA GGCTCAACAA CCGCGAGGTC
GTCGGCTTCA ATGTCTATCG CGCCGTCGGC TCCGGCGAGT TCGCGGTGAC CCGCGACGTT
CGCAAGCGGA TGGCGGAATT CACCGCAGCT CATCCCGGCG TCCGCATCCT CGAGGTCACC
TCGTCGACCG ACGCCGTGGT CGAGGGTTAC GACGCCGCGA TCGAGGCGCT ATGGCTGGGC
GGCTTGCTGG CGGTTCTCGT CGTCTGGCTG TTCCTGCGCG ACATCCGCGC GACGCTGATT
TCATGCGCGG CGCTGCCGTT GTCGCTGATC CCGACCTTCG CCGTGATGGC TGCGCTGAAC
CAGTCGCTGA ACAACATCAC GCTGCTCGCG ATCGCCCTGG TCGTCGGCAT CCTCGTCGAC
GACGCGATCG TGGAAATCGA GAACATCGTT CGACATGTTC GGCAATCCGG AAAACGCGTC
TACGACGCCG CCATCGATGC GGCCGATGAA ATCGGTCTCG CGGTGGTGGC GACGACGTTC
GCGATCATCG TGGTGTTCGC GCCGGTCGGG TTGATGCCCG GCATTCCCGG TCAATTCTTC
AAAGCGTTCT CGATCGCCGT CTGCACGTCG GTGTTCTTCT CGCTGATTGT TGCGCGGCTG
CTGACGCCTT TGATGGCGGC GTTTCTGCTG AAGGCTAACC ACAGCGAGCA TGGCGAGCCG
GCATGGGTTC GGCGCTACAC GTCGATATTA GCCTGGACGC TGCGCCATCG CTGGATCACG
ATTGGCGCAG GCGTGGTGTT CTTCGTCGCC TCACTTGCGC TGGTTCCGTC GCTCCCCGCA
GACTTCATGC CTGCGGCTGA CCGCGGCCGG TCGGTTGTCA TCCTCGAACT GGCGCCAGGC
ACGCCGCTGC AGGACACCGA CGCCGCGACA CAACGCGCCA CGCGGCTGCT GATGGCGCGG
CCTGAGGTGG CGTCGGTCTA CGCGGCGCTC GGCACCGAAA CCTCCACGAT GTCCGGCCCA
GGCGATCTGT CGACCTCGGT CGGCGACGTG CGACGCGCGA CCGTTACGAT CAACCTCGTG
CCGCGCGCCG AACGCGCGCT GTCGCAACAG GCATTCGAGA CTTCGATCGG GCGGCAACTG
GCGTCCATTC CCGGCCTCCG GATCCAGCTT GGCGAGGACG GATCATCGGG CGCGAAAATC
CAGGTCGCGC TGCTCGGCGA CGACTCCGCG ACGCTCGCCG ACGCAGCCAG GCGATTGGCA
CAGGAGATGC GGACGCTGCC GGGATTCCAT CGGGCGCGCG TAGCGAGCAG CTCGGCGAGG
CCCGAGCTAC ATATTCTGCC CAAACAGGAC AAGGCGGCAC TGTTCGGCGT GACCACGGCC
GCGATCGCCA AAACCGTGAC GATCGCCACC GTTGGCGACA TCGAGCAGAA TCTGTCGAAG
TTCAGCCTGG ACACCCGACA GATCCCGATC CGGGTGCTGC TGAACGAGGC CGCGCGCAGC
GACTTGTCGC GCCTATCTCT GCTGCAAGTC CCGGCCTTCG AACGCCCGGT GGCATTGGCG
TCGGTGGCCG ACATCAGCTT CGGATCCGGC CCTGTGCAGA TCGAACGGAC CGATCGAACT
CGCAGCGAAA CCGTCGAAGC GGCGCTGAGC GGGCTCACGG TCGGCGAGGC CGAGAGCGTT
GTCGCCAACC TTCCGCTGAT CAGACGATTG CCGGCCGGGA TCGTCTACAA GCCGGAGGGT
GACTCCGAAC GAATGCGCGA ACTGTTCGAC GGCTTCAAAC TCGCGATCAG CTCGGCGGTC
GTTCTGTTGT TCGTGGTGCT CGCGCTGTTG TTCAATGGCT TCGTGCAGCC CGTCACGATC
CTGACCGCAC TGCCGTTGTC GCTCGGCGGC GCGCTCGGCC TGCTGCTGCT GACGAGTACC
TCGATTTCGT TGCCGGTGCT GATCGGACTG CTGATGCTGA TGGGGATCGC TGCGAAGAAT
TCGATCCTGC TCGTCGAATA CGCCATCGTC GCGCAACGTG ATGGCGGCGT GGATCGCGTG
CAGGCTCTGC TGGACGCGGC GCGCAAACGC GCGCGGCCGA TCGTGATGAC CACCGTCGCC
ATGAGCGCCG GGATGCTGCC GATCGCGTTT GGCATGGGAG CCGATGCCGA ACGGCGCGCC
CCGATGGCCA TCGCGGTGAT CGGCGGCCTG TTCAGTTCGA CGATCCTGAG CCTGGTTTAC
GTTCCGGCGT TCTTCACGAT CATGGACGAT CTGTCGTGCT GGATTGCAAA GCTGTTCCGT
GGCCGAACGC AGAGGGGAGC ATGA
 
Protein sequence
MNNISSWAIR HPVPTTILFV LLTLSGLVGF SQLRLNNMPD MDIPTVTVTV RWAGAAPTEI 
ETQITRFIED SVAGLGAVDH VRSTINEGLS MTMVEFAIGT DIDRASNDVR DAVVSIRSKL
PQAALDPMIR RVDATGQAIL TFVVDAPGMA PDDLSWLIDN DVAKAALAVP GVARISRSGG
VDAEITIKLD PDRLMGLGLT AVEVSDQVRA QTITEPGGRA ALGGMEQAIR ALGSVADVGR
LEDLRIAFSD GRSVKLSELG SVERSWAEPR QRARLNNREV VGFNVYRAVG SGEFAVTRDV
RKRMAEFTAA HPGVRILEVT SSTDAVVEGY DAAIEALWLG GLLAVLVVWL FLRDIRATLI
SCAALPLSLI PTFAVMAALN QSLNNITLLA IALVVGILVD DAIVEIENIV RHVRQSGKRV
YDAAIDAADE IGLAVVATTF AIIVVFAPVG LMPGIPGQFF KAFSIAVCTS VFFSLIVARL
LTPLMAAFLL KANHSEHGEP AWVRRYTSIL AWTLRHRWIT IGAGVVFFVA SLALVPSLPA
DFMPAADRGR SVVILELAPG TPLQDTDAAT QRATRLLMAR PEVASVYAAL GTETSTMSGP
GDLSTSVGDV RRATVTINLV PRAERALSQQ AFETSIGRQL ASIPGLRIQL GEDGSSGAKI
QVALLGDDSA TLADAARRLA QEMRTLPGFH RARVASSSAR PELHILPKQD KAALFGVTTA
AIAKTVTIAT VGDIEQNLSK FSLDTRQIPI RVLLNEAARS DLSRLSLLQV PAFERPVALA
SVADISFGSG PVQIERTDRT RSETVEAALS GLTVGEAESV VANLPLIRRL PAGIVYKPEG
DSERMRELFD GFKLAISSAV VLLFVVLALL FNGFVQPVTI LTALPLSLGG ALGLLLLTST
SISLPVLIGL LMLMGIAAKN SILLVEYAIV AQRDGGVDRV QALLDAARKR ARPIVMTTVA
MSAGMLPIAF GMGADAERRA PMAIAVIGGL FSSTILSLVY VPAFFTIMDD LSCWIAKLFR
GRTQRGA