| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_3009 |
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| Symbol | |
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| ID | 3973616 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB18 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007925 |
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| Strand | - |
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| Start bp | 3303625 |
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| End bp | 3305310 |
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| Gene Length | 1686 bp |
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| Protein Length | 561 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637926120 |
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| Product | type II secretion system protein E |
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| Protein accession | YP_532873 |
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| Protein GI | 90424503 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.350498 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATCGGA CTGCCCAGGA TTTTGTCGCG CATTTTTGCC GCGAGAATGC TCTAGCGGCG
GAATTCGCCG GCCGCGGTGC TGTTGCCGCC GGGGCGGCCG ACGCCGACCG CGGCCTGCGT
AAACTCTGGG AGATCAGCGA ATTGTCGGCG AGTGAGTTCG CCGACGCGGT GGCACGGTTT
TACGACCTGC CGCGAACTAC GCTTCCGGAG CTGATTGCAG CGCAGTCGCA GGCGCATCGG
TTCTCCCGCC GTTTCTTGCG GGAGATGGCG GTGTTTCCTT ATCAGTCAGC GACCGGTGAG
CCGATCGTCG CGATTGCCGA TCCGAGCGAC CACGCGTCGA TACGGGCGGC GGCGATCGTG
TTCGGCGCCG CCGTCAGCAC CCAGGTCGCT TCGTTTGAGG ACATCGCGAC GGTGCTCGAT
CAGCGTCTCG GCGAGGATCA CAACTCCGAG GACGAAAGCG TCGCGAGCAT CTCGTCGCAG
GACGACGACA TCGACAATCT GCGCGATCTG GCCAGCGGCG CGCCGGTGGT CCGCGCGGTC
AACGATCTGT TCGAAAGCGC GGTCGAACTG CGGGCCAGCG ACATTCATAT CGAGCCGACG
CGCACCGCGC TGATCGCGCG GATGCGGATC GACGGACTGT TGCGCACCGT GCCGACGCCG
GCCGGGGTGC CGCCGCAAGC GGTGATTTCC CGGATCAAGA TCTTGGCGGG TCTCAACATC
GCGGAACGGC GGCTGCCGCA GGACGGCGCT GCTCGGTTCC GTGCGGCGCG TTCGGAGATC
GACATGCGCG TTGCGATCAT GCCGACGCAA CACGGCGAGT CCGCGGTCAT CCGCTTGCTG
CCGAGGGACC GCGGCCTGCT CTCGATCGAG AAGCTCGGCT TCCTGCCGGG CGACGAAGGC
AAGCTCCGCG GCATGCTGAC GCTGCCACAC GGCATGATCG TGGTGACCGG GCCGACCGGG
AGCGGCAAGA CCACGACGCT TGCCACGGTC CTGTCGGTGC TCAACCAACC GACCCGGAAG
ATTTTGACGA TCGAGGATCC GGTCGAATAC GAAATTCCGG GGATATGCCA ATCCCAGGCC
AAGCCGTCGA TCGGTCTGAC CTTTGCGACC GCGCTGCGCG CCTTCGTCCG CCAGGACCCC
GACGTGATCA TGGTCGGAGA GATCCGCGAC GCCGAAACCG CGCATGTCGC GATCCACGCG
GCGCTGACCG GCCATCTGGT GCTCACCACG CTGCACACCG AAACCGCGGC CGCCGCGGTG
CCGCGGCTGC TCGACCTGGG GGTGGAGGCG TTCTTGCTGC GCTCGACGCT ACGGGCGGTG
ATCGCACAAC GCCTGGTTCG TCAGTTGTGC GATCGATGCA AGGCCGGCCG TGCTTTGACC
GAAGCCGATA TCGAGGTCGA TCCGCGCTAT GCCGCCATTG GGCTCAAACT CGGCGAGACC
ATCTTCGAGC CGGTCGGCTG CGAGCGCTGC GGCGGTACCG GGTATCGCGG CCGCTGTGGC
GTGTTCGAGA TCTTGGAGAT GAGCGAAGAC GTCCGCCAGT TGATCGACCA GCAATCCGAT
TGGGCCTCGA TCGACAAGGT CGCGGTTCGC AACGGCATGA CGACGATGAT CGATGACGGC
CTCGCCAAAT GCCGCTGCGG CATGACCTCG GCGGCCGAGA TTCTTCGCGT CACCACGGTG
CGGTGA
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| Protein sequence | MDRTAQDFVA HFCRENALAA EFAGRGAVAA GAADADRGLR KLWEISELSA SEFADAVARF
YDLPRTTLPE LIAAQSQAHR FSRRFLREMA VFPYQSATGE PIVAIADPSD HASIRAAAIV
FGAAVSTQVA SFEDIATVLD QRLGEDHNSE DESVASISSQ DDDIDNLRDL ASGAPVVRAV
NDLFESAVEL RASDIHIEPT RTALIARMRI DGLLRTVPTP AGVPPQAVIS RIKILAGLNI
AERRLPQDGA ARFRAARSEI DMRVAIMPTQ HGESAVIRLL PRDRGLLSIE KLGFLPGDEG
KLRGMLTLPH GMIVVTGPTG SGKTTTLATV LSVLNQPTRK ILTIEDPVEY EIPGICQSQA
KPSIGLTFAT ALRAFVRQDP DVIMVGEIRD AETAHVAIHA ALTGHLVLTT LHTETAAAAV
PRLLDLGVEA FLLRSTLRAV IAQRLVRQLC DRCKAGRALT EADIEVDPRY AAIGLKLGET
IFEPVGCERC GGTGYRGRCG VFEILEMSED VRQLIDQQSD WASIDKVAVR NGMTTMIDDG
LAKCRCGMTS AAEILRVTTV R
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