Gene RPC_3000 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPC_3000 
Symbol 
ID3973242 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB18 
KingdomBacteria 
Replicon accessionNC_007925 
Strand
Start bp3296630 
End bp3297562 
Gene Length933 bp 
Protein Length310 aa 
Translation table11 
GC content65% 
IMG OID637926111 
ProductPpiC-type peptidyl-prolyl cis-trans isomerase 
Protein accessionYP_532864 
Protein GI90424494 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG0760] Parvulin-like peptidyl-prolyl isomerase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.730656 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0111682 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATGACTT CCATGCCCGC TCTCGGTATG GCAAAGGCCC GCGGCGCTGT GCGCGCCGGC 
GCTGCCGCCG TCTGCTTTTC GGTGTTGCTC GCCGCCACGG CGGGACACAC GTCCGGCCAG
TCGGCGCCCG CCGACCCGGT GATCGCCACC GTCAACGGCG CGCCCATTCA TGAGAGCGAT
CTGCAGTTGG CGGACGAGAT GATCGGCCGC AACCTGCCCG TTCAGGAGAA GCGTGAGCGG
CGCGACGCGC TGCTCACATT AGTGATCGAT TCAATGGTGC TCGCCCAAGT CGCCAAGGAT
CGAAAGATCG CCGATGAGGC GGATCTGCAA CGTCGGGCCA GCTACGCGCG CAATCAGGGG
CTGATGAACC ATCTGCTCGA GGTGGTCGGT CAACAGGCGG TGACCGAAGA TGCGGTGCGC
AAGGCCTACC AGGAGGTTGT GGTGAAGCCG GCGACCGACC AGATCGAGCT GCATCTTCGC
CACCTCGTGT TCAAGTTTCC GGATGCGAAC GATGCGGCCG CGGCGAGCGC AACGGAGGTC
AAGGCCAAGG CGGCGTTCGC GCGGATCGAC AAGGGCGAAG ATTTTGCGGC CGTCGCAGCG
GATCTATCGG AAGATCCCGC CACCAAGGCC AGAGGCGGTG ACTTCGACTG GCGCACGCGC
CCGGAGATGG GAAAGGAATA TGCCGACGTC GCCTTCGCGC TGAAGCCGGG AGAGGTGTCC
GCGCCGATCA AGACCGCCTT CGGCTGGCAC ATCATCAAAC TCGAGGAGCG GCGCCCACGC
AAGCCGGTGG AATTTGAAAA GATCCGCGAC CGGGTCGCGG CCATGGTTGC CAATGCGGCG
CGGTTTGATC TGGTCGACAA GGCGCGCTCC GCGGCGACGA TCGAGCGGTT CGACCGTGCT
CAAGCGGCGC CAAACAAGCA GAGCAGCAAC TAA
 
Protein sequence
MMTSMPALGM AKARGAVRAG AAAVCFSVLL AATAGHTSGQ SAPADPVIAT VNGAPIHESD 
LQLADEMIGR NLPVQEKRER RDALLTLVID SMVLAQVAKD RKIADEADLQ RRASYARNQG
LMNHLLEVVG QQAVTEDAVR KAYQEVVVKP ATDQIELHLR HLVFKFPDAN DAAAASATEV
KAKAAFARID KGEDFAAVAA DLSEDPATKA RGGDFDWRTR PEMGKEYADV AFALKPGEVS
APIKTAFGWH IIKLEERRPR KPVEFEKIRD RVAAMVANAA RFDLVDKARS AATIERFDRA
QAAPNKQSSN