| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_2993 |
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| Symbol | |
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| ID | 3973235 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB18 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007925 |
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| Strand | - |
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| Start bp | 3274909 |
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| End bp | 3276681 |
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| Gene Length | 1773 bp |
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| Protein Length | 590 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637926104 |
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| Product | hemolysin activation/secretion protein |
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| Protein accession | YP_532857 |
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| Protein GI | 90424487 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2831] Hemolysin activation/secretion protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.00815358 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | GTGGCGTTTG GGATCCGTTC CGGCACGACT GCCGGGCGGG GGTGGCAGAT TGCCGCCTGC
TGTCTGGCGT TGGCGACCTG CGATGGGCGG TCCACGTTGG CCGCGGCAGC GCCTGCGGAA
TCGATGACAG GCGAGCCGAA TAGAAGCAGC CAAGCCACTG ACAGTTCCGC GATTGCGTCG
CGACCGGGAC GGCCGGCCGG GACCGGTTCG CCCGGTACGA GTTCGAAGGC GGCTGCCTCG
GGCACGACGA GCCGCTTCGA TATTGACGAG TACCGGGTCG AGGGGGCCGA AAACCTTCCG
CAGATCGAGG TCGAGAGTGC GGTTTATCCG TATCTCGGCC CGGGTCGTAC CTCGGACGAC
GTCGAAAAGG CCCGCGCCGC CTTGGAGAAG GCTTACCATG ACAAGGGCCT GCAAACCGTG
GGCGTCTCTG TTCCGCAGCA GGATGCGCAA CGCGGCTTCG TCGTTCTCAA AGTGGTCGAG
AACAAGGTGG GCCGGCTGAG GGTCAAAGGC TCGCGCTATT TCGATCTCGC CGAAATCAAG
CGCCGGGCGC CTTCCGTCAA GGAGGGGGCG TTGCCGAATC TCCAGGCGGT GACCAACGAC
ATTGTCGCGC TCAACCGGTG GCCGGACCGG CGGGTCACGC CGGCGCTGCG CGCCGGGGTG
ACGCCTGGCA CCGTCGACGT CGATCTCAAT GTCGAGGACA CTTATCCGCT GCACGGCAGC
GTCGAACTCA ACAATCGGCA GAGTCCGAGT ACGACGCCGC TCCGCCTGAG CGCGTCGCTG
CGGTACGACA ATCTGTGGCA ACTCGGCCAC TCGATGACGG TGAGCTATCA GGTGGCACCG
CAGAATCCGA AGGATGCGAC GGTTGTCTCC GCCTCCTACC TGGCGCGAAC CGACTATGAC
TGGCTGAATA TACTGGTCTA TGGGCTGAAA TCGGACAGTT CGGTCGCGAC CGTCGGCGGA
TCGAACGTCG TCGGCCCCGG CCAGGTGATC GGCTTCCGCG ATGTGATCAC GTTGCCGACA
CGGGGCGAGC TGTTTCACAC GCTGTCGCTG GGAGCCGACT ACAAGGATTT CCAGCAGACC
CTATCGCTCG CTGATGGCTC GTTCGATTCG CCGGTGAAAT ACGTTCCGCT GGTTGCCGCC
TACAGCGCGA CTTGGCAAGG GGATGGACGG CTGACGCAGC TCAACGCGGC CGTTACCACG
GGACTGCGCG GCGCCGGCAG CAGCCCGGAA CAGTTCGACG TCAAGCGTTA CAAGGCGACT
GGTAGCTTCG CTCATCTGCG CGGAGATCTG TCCCACACCC AAGAGTTGCC CGGCGGCCTG
CAATTGTTCG GCAAGCTGCA GGGCCAGCTT GCCGATCAGC CGCTGGTTTC CAGCGAACAG
TTCAGTCTCG GAGGCCAGGA TACCGTGCGC GGGTATCTCG AATCCGAGGT GCTGGGCGAT
TACGGCGTCG CCGGAACGCT CGAACTGCGC TCCCCGAATC TCGCTCCGTA CTGGGAACAG
ACGTTGGAAA ATCCAACTGG CGCGCCAGTG AAATTCAATG TGTTCGACGA GTGGCGGTTC
TTCGCATTTG CCGATGCCGG CCATGCCAAG ATCCACAATC CGCTCGAGGA ACAGCAGCAG
CGGTTCGATC TGGCGAGCTA CGGCGTCGGC ACCCGGGTGA AGACCCTGAG GTACCTTAAT
GGCATCGTGT TTGTCGGCAT ACCAGTGACC AGTCAACAGG TCACGGTCGC TCGTAGCCCG
CTCGTGAGCT TTCGAATTTG GGGAGAATTC TGA
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| Protein sequence | MAFGIRSGTT AGRGWQIAAC CLALATCDGR STLAAAAPAE SMTGEPNRSS QATDSSAIAS
RPGRPAGTGS PGTSSKAAAS GTTSRFDIDE YRVEGAENLP QIEVESAVYP YLGPGRTSDD
VEKARAALEK AYHDKGLQTV GVSVPQQDAQ RGFVVLKVVE NKVGRLRVKG SRYFDLAEIK
RRAPSVKEGA LPNLQAVTND IVALNRWPDR RVTPALRAGV TPGTVDVDLN VEDTYPLHGS
VELNNRQSPS TTPLRLSASL RYDNLWQLGH SMTVSYQVAP QNPKDATVVS ASYLARTDYD
WLNILVYGLK SDSSVATVGG SNVVGPGQVI GFRDVITLPT RGELFHTLSL GADYKDFQQT
LSLADGSFDS PVKYVPLVAA YSATWQGDGR LTQLNAAVTT GLRGAGSSPE QFDVKRYKAT
GSFAHLRGDL SHTQELPGGL QLFGKLQGQL ADQPLVSSEQ FSLGGQDTVR GYLESEVLGD
YGVAGTLELR SPNLAPYWEQ TLENPTGAPV KFNVFDEWRF FAFADAGHAK IHNPLEEQQQ
RFDLASYGVG TRVKTLRYLN GIVFVGIPVT SQQVTVARSP LVSFRIWGEF
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