| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_2980 |
|---|
| Symbol | |
|---|
| ID | 3969902 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB18 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007925 |
|---|
| Strand | + |
|---|
| Start bp | 3260327 |
|---|
| End bp | 3262603 |
|---|
| Gene Length | 2277 bp |
|---|
| Protein Length | 758 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637926091 |
|---|
| Product | formate acetyltransferase |
|---|
| Protein accession | YP_532844 |
|---|
| Protein GI | 90424474 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1882] Pyruvate-formate lyase |
|---|
| TIGRFAM ID | [TIGR01255] formate acetyltransferase 1 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.235971 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACATCC AGAACACCAT TGACGTCGTT GCGGCGGCAC CGCTCCCCAA CGACCCCTGG
CATGATTTTG CTGCCGGCAA CTGGACCCGC GAGATCGACG TTCGTGATTT CATCCAGAAG
AACGTGACGC CGTGGGTGGG CGACGCGTCG TTCCTGGTGC CGGCGACCGC GCGCACTCAG
GCGCTGTGGG CCAAGCTGAA GGATCTGTTG CAGCTCGAGC GCGACCACGG CGGCGTGCTC
GACGTCGACA GCAAGACGTT CTCCTCGATC GTGGCGCATG GCGCCGGCTA TATCGACCGC
GAGCTCGAAC AGATCGTCGG CCTGCAGACC GACGCGCCGT TGAAGCGCGC GATCATGCCG
TTCGGCGGCT GGCGCATGGT GAAGAACGGG CTCGAAGCCT ACGGCCTCAA AGCCGATCCG
AGCTTCGAGA AGATCTTCCC CGGCATCCGC AAGACTCATA ACGACGCGGT GTTCGACGTC
TATTCGCCCG ACGCGGTGAA GTGCCGCAAG TCCGGCATCA TCACCGGGCT GCCCGACGCC
TACGGCCGCG GCCGCATCAT CGGCGACTAT CGCCGCGTCG CGCTGTACGG CGTGGCCCGG
CTGATCGAGG ACAAGAAGGC GCAAGCCGCC AGCCTCGAAC TCGACTCGCT CGACGACGCC
GTGCTGCGGC AGCGCGAGGA GATCGCTGAG CAGATCCGCG CGTTGAAGGA ACTGGTGGTG
ATGGCGAAGG CCTACGGCTT CGACCTCGCC AAGCCGGCGC TGAACGCCCG CGAGGCGATC
CAATGGACCT ACTTCGCCTA TCTCGCCGCG GTGAAGGAAT CCAACGGCGC CGCGATGTCG
CTCGGCCGGG TGTCGAACTT CATCGACATC TACGTCGAGC GTGACATCGC CGAAGGCGTG
CTCGACGAAG CCACCGCCCA GGAGCTGGTC GATCACTTCG TCATGAAGCT GCGCATCGTG
CGCTTCCTGC GCACCCCGGA ATACGACGCG CTGTTCTCCG GCGATCCGAC CTGGGTCACC
GAATCGATCG GCGGCATGGG GCTGGACGGC CGCGCGCTGG TGACCAAGTC GAGCTTCCGC
TTCCTGCACA CGCTGGAGAC GCTCGGACCG GCACCGGAGC CCAACCTCAC CGTGCTGTGG
TCGGACTACC TGCCGCAGGG CTTCAAGGAC TACTGCGCGC TGACCTCGAT CCGCACCTCG
TCGATCCAGT ACGAGAACGA CGATCTGATG CGGGCCTATT GGGGCGACGA TTACGGCATC
GCCTGCTGCG TCTCCGCGAT GCGGATCGGC AAGCAGATGC AGTTCTTCGG CGCCCGCGCC
AACCTCGCCA AGACCATGCT GTACGCCATC AACGGCGGCC GCGACGAACT GTCCGGCGAA
CAGATCGGCC CGACCTTGGC GCCGGTGACC GGCGACGTGC TCGACTATGA TGATGTGAAA
GCCAAGCTCG GCCCGATGAT GGACTGGCTC GCCAAGACCT ATATCGGCGC GCTCAACGCC
ATCCACTACT GCCACGACAA GTACATGTAC GAGCGGATCG AGATGGCGCT GCACGACCGC
GACATCCTGC GCACCATGGC CTGCGGCATC GCCGGTCTGT CGGTGGCCGC CGACAGCCTG
TCGGCGATCA AGCACGCCAA GGTCAAGGTG ATCCGCGACG CCCGCGGGCT TGCCACCGAC
TTCGCGATCG AAGGCGAGTA TCCGGCGTTC GGCAACAATG ACGACCGCGT CGACGAGATC
GCGATCTGGC TGGTCAAGGA GTTCATGGAG CGGCTGCGCA AGCAGAAGAC CTATCGCAAC
TCGGTCGCCA CCATGTCGGT TTTGACCATC ACTTCCAACG TGGTGTACGG CAAGAAGACC
GGCAACACCC CGGACGGCCG CAAGGCCGGT GAGCCGTTCG CGCCGGGCGC CAACCCGATG
CACCGCCGCG ACGTCAAGGG CGCGGTGGCC TCGATGGCCT CGGTGGCGAA ACTGCCCTAC
GCGCATTCGC AGGACGGCAT CTCCTACACC TTCACCATCG TGCCCTCGGC GCTGGGCGCC
GGCGAAGCCG ACCGCGTCGA CAATCTGACC GGCCTGCTCG ACGGTTACTT CGCGCAAGGC
GGCCACCACA TCAACGTCAA CGTGTTCGAC CGCGAGACGC TGCTGCACGC GATGGATCAT
CCGGAACTGT ATCCGCAGCT CACCATCCGG GTCTCCGGCT ACGCGGTGAA CTTCACCAAA
CTGACGCGCG AGCAGCAGCT CGACGTCATC TCTCGGACCT TCCATAGTGT ACACTGA
|
|---|
| Protein sequence | MNIQNTIDVV AAAPLPNDPW HDFAAGNWTR EIDVRDFIQK NVTPWVGDAS FLVPATARTQ
ALWAKLKDLL QLERDHGGVL DVDSKTFSSI VAHGAGYIDR ELEQIVGLQT DAPLKRAIMP
FGGWRMVKNG LEAYGLKADP SFEKIFPGIR KTHNDAVFDV YSPDAVKCRK SGIITGLPDA
YGRGRIIGDY RRVALYGVAR LIEDKKAQAA SLELDSLDDA VLRQREEIAE QIRALKELVV
MAKAYGFDLA KPALNAREAI QWTYFAYLAA VKESNGAAMS LGRVSNFIDI YVERDIAEGV
LDEATAQELV DHFVMKLRIV RFLRTPEYDA LFSGDPTWVT ESIGGMGLDG RALVTKSSFR
FLHTLETLGP APEPNLTVLW SDYLPQGFKD YCALTSIRTS SIQYENDDLM RAYWGDDYGI
ACCVSAMRIG KQMQFFGARA NLAKTMLYAI NGGRDELSGE QIGPTLAPVT GDVLDYDDVK
AKLGPMMDWL AKTYIGALNA IHYCHDKYMY ERIEMALHDR DILRTMACGI AGLSVAADSL
SAIKHAKVKV IRDARGLATD FAIEGEYPAF GNNDDRVDEI AIWLVKEFME RLRKQKTYRN
SVATMSVLTI TSNVVYGKKT GNTPDGRKAG EPFAPGANPM HRRDVKGAVA SMASVAKLPY
AHSQDGISYT FTIVPSALGA GEADRVDNLT GLLDGYFAQG GHHINVNVFD RETLLHAMDH
PELYPQLTIR VSGYAVNFTK LTREQQLDVI SRTFHSVH
|
|---|
| |