| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_2942 |
|---|
| Symbol | |
|---|
| ID | 3969999 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB18 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007925 |
|---|
| Strand | - |
|---|
| Start bp | 3216819 |
|---|
| End bp | 3218909 |
|---|
| Gene Length | 2091 bp |
|---|
| Protein Length | 696 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637926053 |
|---|
| Product | carbon starvation protein CstA |
|---|
| Protein accession | YP_532806 |
|---|
| Protein GI | 90424436 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG1966] Carbon starvation protein, predicted membrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.627155 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTACGC TTGCCACCAA GGACAATGGG ATCTTGTCGA AGCTGCTGTG GGCCGCGGTG
GTGGCGCTCG GCGTAGTGTC GTTCGGCATC GTCGCGCTGA GCCGCGGCGA GACCATCAAC
GCCTCCTGGC TGGTGATCGC CGCGGTCTGC GTCTATTTCA TCGCCTACCG CTTTTACGGG
CTGTTCATCG CCGAGAAGGT GCTGGGCGTC GACCCCAAGC GGCGAACTCC CGCTCACGTC
CACAATGACG GCCTGGATTA CGTCCCGACC AACCGCTACG TGCTGTTCGG GCATCATTTC
GCGGCGATCG CCGGCGCCGG CCCGCTGGTC GGCCCGGTGC TCGCGGCGCA GATGGGCTAT
CTGCCCGGCA CGCTGTGGAT CTTGGCCGGC GTGGTGTTCG CCGGCGCGGT GCAGGATTTC
ACCGTGCTGT TCCTGTCGAC GCGGCGCGAC GGCCGCTCGC TCGGCGATAT CGTGCGCTCG
GAGATGGGAC CGGTCGCCGG CGGCATCGCG CTGATCGGCG TGCTGTTGAT CATGGTGATC
CTGCTCGCGG TGCTGGCGCT GGTGGTGGTC AAGGCGCTGG TCGGCAGTCC GTGGGGCACC
TTTACGGTGT TCTCGACCAT TCCGATCGCC ATGCTGATGG GGGTCTATGC CCGCTTCATC
CGGATCGGCC GGATCGCCGA AATGTCGGTG ATCGGCGTGG TGCTGCTGCT GGCGTCGCTG
ATCTACGGCC GCACCGTGGC GGACAATCCG GCGCTCGCCG CCTGGTTCGA TCTCTCGGGC
GAAACGCTGG CGCTGGTGAT CATCGGCTAC GGCTTCGTCG CCTCGGTGCT GCCGGTGTGG
CTGCTGTTGG CGCCGCGCGA CTATCTGTCG ACCTTCCTCA AGGTCGGCAC CATGGCGCTG
CTCGCGGTCG GCATCATCAT CGTGCAGCCC GATCTGAAGA TGCCGGCGGT CACCCAGTTC
ATCGACGGCT CCGGCCCGGT GTGGTCGGGT AGCCTGTTCC CGTTCCTGTT CATCACCATC
GCCTGCGGCT CGGTGTCCGG CTTCCACGCG CTGATCGCCT CGGGCACCAC GCCGAAAATG
GTCGAGAACG AGAATCAGCT ACGGTTCATC GGCTATGGCG GGATGCTGAC GGAATCCTTC
GTCGCCATCA TGGCGATGAT CGGCGCCACC GTGCTGGAGC CCGGCGTGTA TTTCGCAATC
AACAGCCCCG CGGGCGTGAT CGGCACCACC GCGGTGCAGG CGGCGCAGGT GGTGTCCGGC
TGGGGCTTCG TCGTCACCCC CGACATGCTC AACCAATTGG CGCAGGATGT CGGCGAAAAG
ACCCTGTTGT CGCGCACCGG CGGCGCCCCG ACGCTGGCGC TCGGCATGGC GCACATCCTG
TCCGGGATGT TCGGCGGCCG GGTGCTGATG GGGCTGTGGT ATCACTTCGC CATTCTGTTC
GAGGCGCTGT TCATTCTGAC CACGGTCGAT GCCGGCACAA GGGTCGCCCG CTTCATGATC
CAGGATATGA TCGGCAGCGT GGTGCCGGCG TTCCGCAAGA CCGAGTCCTG GGCCAATAAC
CTGATCGGCT CGGCGCTGGC GGTCTGCGCC TGGGGATACT TCCTGTATCA GGGCGTGATC
GATCCGATGG GCGGCATCAA CACGCTGTGG CCGCTGTTCG GCATCTCCAA TCAGATGCTG
GCCGGCATGG CGCTGATCCT GTGCACCGTG GTGCTGTTCA AGATGAAGCG GCAGCGCTAC
GCCTGGGTGA CCATCGTGCC GACGCTGTGG CTGCTGATCT GCACGCTGAC CGCGGGCTTC
CAGAAGTTGT TCAGCGCCGA CGTCAAGATC GGCTTCGTCG CCCACGCCTG GAAATTCAGC
GATGCGGCCG CGGCCGGCAC GATTTTGGCG CCGGCCAAGA CCATGGAGGA GATGCACCGC
GTCATCGTCA ACGACTACGT CGACGCGACG CTGACGGCGA TGTTCATCGC CGTGGTGCTG
TCGATGATCG TCTACGGGGT GATCGCGATC CGCCGCGCGC TGGGCGATCC GAAGATCACC
GCCATTGAGG TCGGCCTGCC GACCACCGTG CAAGGAGCGA AAATTGCGTG A
|
|---|
| Protein sequence | MSTLATKDNG ILSKLLWAAV VALGVVSFGI VALSRGETIN ASWLVIAAVC VYFIAYRFYG
LFIAEKVLGV DPKRRTPAHV HNDGLDYVPT NRYVLFGHHF AAIAGAGPLV GPVLAAQMGY
LPGTLWILAG VVFAGAVQDF TVLFLSTRRD GRSLGDIVRS EMGPVAGGIA LIGVLLIMVI
LLAVLALVVV KALVGSPWGT FTVFSTIPIA MLMGVYARFI RIGRIAEMSV IGVVLLLASL
IYGRTVADNP ALAAWFDLSG ETLALVIIGY GFVASVLPVW LLLAPRDYLS TFLKVGTMAL
LAVGIIIVQP DLKMPAVTQF IDGSGPVWSG SLFPFLFITI ACGSVSGFHA LIASGTTPKM
VENENQLRFI GYGGMLTESF VAIMAMIGAT VLEPGVYFAI NSPAGVIGTT AVQAAQVVSG
WGFVVTPDML NQLAQDVGEK TLLSRTGGAP TLALGMAHIL SGMFGGRVLM GLWYHFAILF
EALFILTTVD AGTRVARFMI QDMIGSVVPA FRKTESWANN LIGSALAVCA WGYFLYQGVI
DPMGGINTLW PLFGISNQML AGMALILCTV VLFKMKRQRY AWVTIVPTLW LLICTLTAGF
QKLFSADVKI GFVAHAWKFS DAAAAGTILA PAKTMEEMHR VIVNDYVDAT LTAMFIAVVL
SMIVYGVIAI RRALGDPKIT AIEVGLPTTV QGAKIA
|
|---|
| |