| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_2853 |
|---|
| Symbol | |
|---|
| ID | 3970042 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB18 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007925 |
|---|
| Strand | - |
|---|
| Start bp | 3102265 |
|---|
| End bp | 3103560 |
|---|
| Gene Length | 1296 bp |
|---|
| Protein Length | 431 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637925965 |
|---|
| Product | N-acetylmuramoyl-L-alanine amidase |
|---|
| Protein accession | YP_532720 |
|---|
| Protein GI | 90424350 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0860] N-acetylmuramoyl-L-alanine amidase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.657374 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGCCGGGCA GCGCAAATCA TAAATTTGTG TTGGGAGCGC TTGTCGCGTG CGCTGCAGCA
TTGCTGTGCC TGGGCGCCGC CGCCGCCGGT TCGGCCCCGG CTGAGTCGCC AGCATCGGCC
GTCAGCCTGT TTCCAGTTGT ATCCGATGCC CGGCTGGCCG GCGACGCCAA GCAGACCCGG
TTCATCGTCG ATCTCGACAG CAAGCTGCAG CACCGCGTCT TCACTCTGGC CGACCCGTAC
CGGGTGGTGG TCGATATTCC GCAGGTCATT TTTCGCCTGC CGGCCGGCGC CGGGACCAGC
GGGCGCGGTT TGGTCAAGGC GTTTCGCTAC GGCTTGGTGA TGCCGGGCGG CTCGCGGATC
GTGCTGGAAT TGAACGGCCC GGCGAAGATC GAGTCCACTT ATGTGCTCGA CGCGGCCAAT
GGCCAGCCGC CGCGGCTGGT GATCGAGCTC GCAGCGGTGG ACCGCACCGC CTTCGTGCAA
TCGCTCGACG CCGAGAGCCG GCCCGAGCTG CGGCCGGCCG TCGGCAGCGT CGACGCTGTC
GCATCGGTTA CGGCCGCGGC GCGACCGGCA GTTGTGACGC CGCTGGATTC CCGGCCGGTG
GTGGTGCTCG ACCCCGGCCA TGGCGGCATC GACAACGGCA CCCAGGCCGC CAGCGGCGAG
GCGGAAAAGA CCTTGGTGCT GGATTTCGCG CTGGCACTGC GCGATCGAAT CGAAAAGGCC
GGCAAATACC GCGTGGTGAT GACCCGCACC GACGACACCT TCATTCCACT CGGTGAACGG
GTGCGGATCG CGCGGGCGCA GTCCGCGGCG TTGTTCGTCT CGATCCACGC CGACGCGCTG
CCGCGCGGCG AGGGCGACGC CCAGGGTGCC ACCATCTATA CGCTGTCGGA CCGTGCCTCC
GACGCCGAGG CCGAACGGCT GGCCGAATCG GAGAACAAGG CCGACGCCAT CGGCGGCGTC
AATCTGACCG AGGAGCCGAC CGACGTCGCC GACATTCTGA TCGACCTGGC GCAGCGCGAG
ACCAAGGGTT TTTCGAATCG ATTCGCCCGA ATCCTGATGA CCGAAATGAA GAGTGCGGCG
CGGATGCACA AACATCCGCT GAAATCCGCC GGCTTCAAGG TGTTGAAAGC GCCGGACGTG
CCCTCGGTGT TGCTGGAATT GGGCTACGTC TCCAACAAGG GCGACCTGAA ACAGCTGGTG
TCGGAGAACT GGCGGACGCG GACGGTCGGC TCGGTGGCGC AGGCGGTCGA CGCGTTCTTC
GCCAAGCGGG TGGTTTCGGT CGGCGCACCG GACTGA
|
|---|
| Protein sequence | MPGSANHKFV LGALVACAAA LLCLGAAAAG SAPAESPASA VSLFPVVSDA RLAGDAKQTR
FIVDLDSKLQ HRVFTLADPY RVVVDIPQVI FRLPAGAGTS GRGLVKAFRY GLVMPGGSRI
VLELNGPAKI ESTYVLDAAN GQPPRLVIEL AAVDRTAFVQ SLDAESRPEL RPAVGSVDAV
ASVTAAARPA VVTPLDSRPV VVLDPGHGGI DNGTQAASGE AEKTLVLDFA LALRDRIEKA
GKYRVVMTRT DDTFIPLGER VRIARAQSAA LFVSIHADAL PRGEGDAQGA TIYTLSDRAS
DAEAERLAES ENKADAIGGV NLTEEPTDVA DILIDLAQRE TKGFSNRFAR ILMTEMKSAA
RMHKHPLKSA GFKVLKAPDV PSVLLELGYV SNKGDLKQLV SENWRTRTVG SVAQAVDAFF
AKRVVSVGAP D
|
|---|
| |