Gene RPC_2827 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPC_2827 
Symbol 
ID3970094 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB18 
KingdomBacteria 
Replicon accessionNC_007925 
Strand
Start bp3069305 
End bp3071362 
Gene Length2058 bp 
Protein Length685 aa 
Translation table11 
GC content66% 
IMG OID637925939 
ProductDNA topoisomerase IV subunit B 
Protein accessionYP_532694 
Protein GI90424324 
COG category[L] Replication, recombination and repair 
COG ID[COG0187] Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit 
TIGRFAM ID[TIGR01055] DNA topoisomerase IV, B subunit, proteobacterial 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.116959 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCCAAGG CATTGAAGGC GAACACCAAG TCGAAGGCGG CGGAGGACCT GTTCGGGGCC 
CCGCAGCCGA AACTCCCGGC TGCTGCAAAG GCGGCCCCGC GGGCGTCGAG CGCCGAGGGC
GACTATACCG CCGCCGACAT CGAGGTGCTG GAGGGGCTGG AACCGGTGCG TCGCCGGCCC
GGCATGTATA TCGGCGGCAC CGACGAAAAG GCGCTGCACC ATCTGTTCGC CGAGGTGATC
GACAATTCGA TGGACGAAGC CCTGGCCGGC CACGCCACCT TCATCGAGGT GACGCTGGCC
GCCGACGGCT TCCTCACCGT GTCGGACAAC GGACGCGGCA TCCCGGTCGA TCCGCACCCG
AAATTCCCGA AAAAGAGCGC GCTCGAAGTC ATCATGTGCA CGCTGCATTC CGGCGGCAAG
TTCGACTCCA AGGTTTACGA GACCTCGGGC GGCCTGCACG GCGTCGGCGT CAGCGTGGTC
AACGCGCTGT CCTGCCTGCT CGAGGTCGAG GTGGCGCGCA GCCAGCAGCT CTACAAGATG
ACGTTCGAGC GCGGCCTGCC GATGGGGAAA CTGGAAAGCC TCGGCAAGGT CCACAACCGC
CGCGGCACCA CCATCCGCTT CAAGCCGGAT CCGCAGATTT TCGGGCCGAA GGCGGCGTTC
AAGCCGCAGC GGCTGTTCAA GATGGCGCGC TCCAAGGCCT ACCTGTTCGG CGGCGTCGAG
ATCCGCTGGC ATTGCGATCC GGAACTGTTG AAGGGCCTGG AGGGCGTGCC GGCCGAAGAC
ACTTTCCACT TCCCCGGCGG TCTGAAGGAC TTTCTCGGCG CCGCGATCCA CAACGACACT
TTGGTGCATC CCGACATCTT CTCCGGCCGC TCCGGCCGGG TCGGCGCCCA TGGCGGCTGC
GAATGGGCGG TGGCCTGGAC GGCGGACGCC GACGGCTTCC TGTCATCCTA CTGCAACACC
GTGCCGACCC CGGACGGCGG CACCCACGAA GCCGGCATGC GCTCCGCCCT GCTCCGCGGC
CTCAAGGACC ACGCCGAGCG CGCCGGCCAG GGCAAGCGCG CCTCATCGAT CACCTCGGAA
GACGTCATGG TCGGCGCCGC GGTGATGCTG AGCGTGTTCG TGCGCGAGCC CGAGTTCCAG
GGCCAGACCA AGGATCGCCT CGCTACCGCC GAGGCGCAGA AGATCGTCGA ACAGGCCATC
AAAGACCCGT TCGACCATTG GCTGAGTGGC AATCCGCTGC AAGCCAACAA GCTGCTCGAA
TTCGTGCTTG AGCGCGCCGA CGAACGGCTG CGCCGTCGCC AAGAGAAGGA AATCTCCCGC
AAGACCGCGG TGAAGAAACT GCGGCTGCCC GGCAAGCTCG CCGACTGCAC CAACACCGCG
GCGGAAGGCT CCGAGCTGTT CATCGTCGAA GGCGATTCGG CGGGCGGCAG CGCCAAGCAG
GGCCGCGACC GCAAGACCCA GGCCATCCTG CCGTTGCGCG GCAAGATCCT CAACGTGGCC
TCGGCGACCC GCGACAAGCT CACTGCCAAC GCGCAGCTCT CCGACCTGAT GCAGGCGATC
GGCTGCGGCA GTGGGGCGAA TTATCGCGAG GACGATCTGC GCTATTCGCG GATCATCATC
ATGACCGACG CCGACGTCGA CGGCGCGCAT ATCGCCTCGC TGCTGATCAC TTTCTTCTAC
CGGCAGATGC CGAAGCTGAT CGACGAAGGC CATCTCTATC TGGCTGTCCC GCCCCTGTAC
CGCCTGACCC ACGGCGCCAA GACGGTGTAC GCCCGCGACG ACGCCCACAA AGAGCAACTG
CTGAAATCCG AGTTCAACGC CAACGCCAAG GTCGACGTCG GCCGCTTCAA AGGCTTGGGC
GAAATGATGC CGGCGCAGCT GAAAGAAACC ACCATGGACC CGGCCAAGCG CACGCTGCTG
CGCGTCGCGC TGGCGGACAT CGACCGCGAA GGCACCGCGG ATTCGGTGGA GCGGCTGATG
GGCACCAAGG CCGAAGCCCG CTTCGCCTTC ATCTCGGAAA AAGCCGAATT CGCCAGCGAG
GATTTGTTGG ACGTGTAG
 
Protein sequence
MAKALKANTK SKAAEDLFGA PQPKLPAAAK AAPRASSAEG DYTAADIEVL EGLEPVRRRP 
GMYIGGTDEK ALHHLFAEVI DNSMDEALAG HATFIEVTLA ADGFLTVSDN GRGIPVDPHP
KFPKKSALEV IMCTLHSGGK FDSKVYETSG GLHGVGVSVV NALSCLLEVE VARSQQLYKM
TFERGLPMGK LESLGKVHNR RGTTIRFKPD PQIFGPKAAF KPQRLFKMAR SKAYLFGGVE
IRWHCDPELL KGLEGVPAED TFHFPGGLKD FLGAAIHNDT LVHPDIFSGR SGRVGAHGGC
EWAVAWTADA DGFLSSYCNT VPTPDGGTHE AGMRSALLRG LKDHAERAGQ GKRASSITSE
DVMVGAAVML SVFVREPEFQ GQTKDRLATA EAQKIVEQAI KDPFDHWLSG NPLQANKLLE
FVLERADERL RRRQEKEISR KTAVKKLRLP GKLADCTNTA AEGSELFIVE GDSAGGSAKQ
GRDRKTQAIL PLRGKILNVA SATRDKLTAN AQLSDLMQAI GCGSGANYRE DDLRYSRIII
MTDADVDGAH IASLLITFFY RQMPKLIDEG HLYLAVPPLY RLTHGAKTVY ARDDAHKEQL
LKSEFNANAK VDVGRFKGLG EMMPAQLKET TMDPAKRTLL RVALADIDRE GTADSVERLM
GTKAEARFAF ISEKAEFASE DLLDV