Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPC_2827 |
Symbol | |
ID | 3970094 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB18 |
Kingdom | Bacteria |
Replicon accession | NC_007925 |
Strand | + |
Start bp | 3069305 |
End bp | 3071362 |
Gene Length | 2058 bp |
Protein Length | 685 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 637925939 |
Product | DNA topoisomerase IV subunit B |
Protein accession | YP_532694 |
Protein GI | 90424324 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0187] Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit |
TIGRFAM ID | [TIGR01055] DNA topoisomerase IV, B subunit, proteobacterial |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.116959 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCCAAGG CATTGAAGGC GAACACCAAG TCGAAGGCGG CGGAGGACCT GTTCGGGGCC CCGCAGCCGA AACTCCCGGC TGCTGCAAAG GCGGCCCCGC GGGCGTCGAG CGCCGAGGGC GACTATACCG CCGCCGACAT CGAGGTGCTG GAGGGGCTGG AACCGGTGCG TCGCCGGCCC GGCATGTATA TCGGCGGCAC CGACGAAAAG GCGCTGCACC ATCTGTTCGC CGAGGTGATC GACAATTCGA TGGACGAAGC CCTGGCCGGC CACGCCACCT TCATCGAGGT GACGCTGGCC GCCGACGGCT TCCTCACCGT GTCGGACAAC GGACGCGGCA TCCCGGTCGA TCCGCACCCG AAATTCCCGA AAAAGAGCGC GCTCGAAGTC ATCATGTGCA CGCTGCATTC CGGCGGCAAG TTCGACTCCA AGGTTTACGA GACCTCGGGC GGCCTGCACG GCGTCGGCGT CAGCGTGGTC AACGCGCTGT CCTGCCTGCT CGAGGTCGAG GTGGCGCGCA GCCAGCAGCT CTACAAGATG ACGTTCGAGC GCGGCCTGCC GATGGGGAAA CTGGAAAGCC TCGGCAAGGT CCACAACCGC CGCGGCACCA CCATCCGCTT CAAGCCGGAT CCGCAGATTT TCGGGCCGAA GGCGGCGTTC AAGCCGCAGC GGCTGTTCAA GATGGCGCGC TCCAAGGCCT ACCTGTTCGG CGGCGTCGAG ATCCGCTGGC ATTGCGATCC GGAACTGTTG AAGGGCCTGG AGGGCGTGCC GGCCGAAGAC ACTTTCCACT TCCCCGGCGG TCTGAAGGAC TTTCTCGGCG CCGCGATCCA CAACGACACT TTGGTGCATC CCGACATCTT CTCCGGCCGC TCCGGCCGGG TCGGCGCCCA TGGCGGCTGC GAATGGGCGG TGGCCTGGAC GGCGGACGCC GACGGCTTCC TGTCATCCTA CTGCAACACC GTGCCGACCC CGGACGGCGG CACCCACGAA GCCGGCATGC GCTCCGCCCT GCTCCGCGGC CTCAAGGACC ACGCCGAGCG CGCCGGCCAG GGCAAGCGCG CCTCATCGAT CACCTCGGAA GACGTCATGG TCGGCGCCGC GGTGATGCTG AGCGTGTTCG TGCGCGAGCC CGAGTTCCAG GGCCAGACCA AGGATCGCCT CGCTACCGCC GAGGCGCAGA AGATCGTCGA ACAGGCCATC AAAGACCCGT TCGACCATTG GCTGAGTGGC AATCCGCTGC AAGCCAACAA GCTGCTCGAA TTCGTGCTTG AGCGCGCCGA CGAACGGCTG CGCCGTCGCC AAGAGAAGGA AATCTCCCGC AAGACCGCGG TGAAGAAACT GCGGCTGCCC GGCAAGCTCG CCGACTGCAC CAACACCGCG GCGGAAGGCT CCGAGCTGTT CATCGTCGAA GGCGATTCGG CGGGCGGCAG CGCCAAGCAG GGCCGCGACC GCAAGACCCA GGCCATCCTG CCGTTGCGCG GCAAGATCCT CAACGTGGCC TCGGCGACCC GCGACAAGCT CACTGCCAAC GCGCAGCTCT CCGACCTGAT GCAGGCGATC GGCTGCGGCA GTGGGGCGAA TTATCGCGAG GACGATCTGC GCTATTCGCG GATCATCATC ATGACCGACG CCGACGTCGA CGGCGCGCAT ATCGCCTCGC TGCTGATCAC TTTCTTCTAC CGGCAGATGC CGAAGCTGAT CGACGAAGGC CATCTCTATC TGGCTGTCCC GCCCCTGTAC CGCCTGACCC ACGGCGCCAA GACGGTGTAC GCCCGCGACG ACGCCCACAA AGAGCAACTG CTGAAATCCG AGTTCAACGC CAACGCCAAG GTCGACGTCG GCCGCTTCAA AGGCTTGGGC GAAATGATGC CGGCGCAGCT GAAAGAAACC ACCATGGACC CGGCCAAGCG CACGCTGCTG CGCGTCGCGC TGGCGGACAT CGACCGCGAA GGCACCGCGG ATTCGGTGGA GCGGCTGATG GGCACCAAGG CCGAAGCCCG CTTCGCCTTC ATCTCGGAAA AAGCCGAATT CGCCAGCGAG GATTTGTTGG ACGTGTAG
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Protein sequence | MAKALKANTK SKAAEDLFGA PQPKLPAAAK AAPRASSAEG DYTAADIEVL EGLEPVRRRP GMYIGGTDEK ALHHLFAEVI DNSMDEALAG HATFIEVTLA ADGFLTVSDN GRGIPVDPHP KFPKKSALEV IMCTLHSGGK FDSKVYETSG GLHGVGVSVV NALSCLLEVE VARSQQLYKM TFERGLPMGK LESLGKVHNR RGTTIRFKPD PQIFGPKAAF KPQRLFKMAR SKAYLFGGVE IRWHCDPELL KGLEGVPAED TFHFPGGLKD FLGAAIHNDT LVHPDIFSGR SGRVGAHGGC EWAVAWTADA DGFLSSYCNT VPTPDGGTHE AGMRSALLRG LKDHAERAGQ GKRASSITSE DVMVGAAVML SVFVREPEFQ GQTKDRLATA EAQKIVEQAI KDPFDHWLSG NPLQANKLLE FVLERADERL RRRQEKEISR KTAVKKLRLP GKLADCTNTA AEGSELFIVE GDSAGGSAKQ GRDRKTQAIL PLRGKILNVA SATRDKLTAN AQLSDLMQAI GCGSGANYRE DDLRYSRIII MTDADVDGAH IASLLITFFY RQMPKLIDEG HLYLAVPPLY RLTHGAKTVY ARDDAHKEQL LKSEFNANAK VDVGRFKGLG EMMPAQLKET TMDPAKRTLL RVALADIDRE GTADSVERLM GTKAEARFAF ISEKAEFASE DLLDV
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