| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_2729 |
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| Symbol | |
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| ID | 3970282 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB18 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007925 |
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| Strand | - |
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| Start bp | 2963367 |
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| End bp | 2966477 |
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| Gene Length | 3111 bp |
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| Protein Length | 1036 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 637925839 |
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| Product | hydrophobe/amphiphile efflux-1 HAE1 |
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| Protein accession | YP_532596 |
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| Protein GI | 90424226 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.0409192 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.0822346 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTCAGT TCTTCATCAA CCGGCCGGTG TTCGCCTGGG TCATCGCGAT CTTCATCGCG
CTGATCGGCG TAATCGCCAT GACGCAGCTT CCGGTGTCGC GCTTTCCGAC GATTGCGCCC
CCCAGCGTCA GCATCTATGC GACGTATACG GGCGCGACGC CGCAGACCAT CAACGACAGC
GTCGTCACGC TGATCGAAAG GGAATTGTCG AGCGTCAAGA ACCTGCTGTA TTTCGAATCG
ACCGTGGATA CGTCCGGCAG CGCCAGCATC ACCGCGACGT TCAAGCCGGG CACCGCGCCC
GACCTGGCCC AGGTGGACGT GCAGAACCGT CTGAAGGCGG TTGAACCGCG TCTTCCCGAG
GCGGTTCGGC GTATCGGCGT CACCGTGGAA TCCGCGGCCT CGGACTTCCT GATGATCGTG
ACGCTCAACT CGCCCAACGG CGCGTACGAC GAACTCGCGC TCGGCGACTA TATGACACGA
CACATCGTGC AGGAGCTGAA GCGCGTGGAC GGCGTCGGCC GAGTGCAGAC CTTCGGTTCA
GAAAAGGCGA TGCGCATATG GGTCGATCCC GCCAAGCTGG TGTCCTATTC GCTGTCGCTG
GCCCAGATCA CGGCTGCAAT CCAGGCGCAG AACGCCCAGA TCGCACCGGG CAGGGTGGGG
GCGGAGCCGA CGGTCTTGGG CCAGAAAGTC AGTATTCCGC TCACTGTCTA CGGACAGTTG
CAGACCCCCG AGGAGTTCAG GGCGATCGTT CTGCGCGCCG AAAGCGATGG CTCCAAGCTG
GTGTTGGGCG ATGTCGCGCG CGTCGAACTT GGCGCTCAGA GCCTTAGCTT CGCGACGCTC
GAAAATGGCA AGCCGGCCAC CGCCGCGGGC ATCCAGTTGG CGCCGGGTGC CAACGCGGTG
CGCGCCGCCG CCGCTGTTTA TGCGCGCCTT GCCGAACTCG CGCCGGCGAT GCCGGAAGGC
ATGAGCTATG CCGTCGGCTT CGACACCGCG CCGTTTGTGA AGATCTCGAT CGAGAAGGTC
GTCCATACGC TGATCGAGGC CATGGTGCTC GTCGTTCTGG TGATGCTGCT GTTCCTACAG
AACATCCGAT ACACGCTGAT CCCGGCGATC GTGGCGCCGA TCGCGCTGCT CGGCACCTTC
GCGGTGATGT GGATCGCCGG ATATTCGATC AACGTGTTGA CGATGTTCGG CATGGTGCTG
GCGATCGGGA TCATCGTCGA CGACGCCATC GTCGTGGTCG AAAATGTCGA ACGGATCATG
GCCTCCGAGG GCCTGCCGCC CAAACAAGCC ACCCAGAAGG CCATGAAGGA GATCACCGGC
GCGATCATCG GGATCACCCT GGTGCTGTCC GCAGTGTTCA TTCCGATGGG ACTGGCGAGC
GGTTCGGTCG GCGCGATCTA TCGGCAGTTC ACGCTGTCGA TGGCGGTGTC GATCCTGTTC
TCGGCGTTCC TGGCGCTCTC GCTCACGCCC GCGCTTTGCG CCACGCTACT GAAGCCGATC
GCCGCCGGCC ATCACGAGAA GAAAGGTTTC TTCGGCTGGT TCAACCGCAG TTTCAACCGG
CTGACGGAAG GCTATGCCGG CTTCGTCGCG GCGTTGCTGC GCAGGACTGG GCGCATGATG
GTCGTTTACG CCGTCATCGT CGCCGCGCTG GCCTACTGCT ACACGCGGCT GCCGTCGTCG
TTCGTCCCGG CGGAGGATCA GGGCAACTTC ATGACCAGCT TCACGCTGCC CGCCGACGCG
ACGGCCGAAC GGACCCTCAG TATCGTCAAG CAATACGATG CCTATGTCGC GACGCGAGCC
GCGGTGGCGA GCAACACCTC GATCATCGGC TTTGGCTTCT CCGGCTCCGG ATCGAACGCG
GCGTTGGCGT TCACCAGCCT GAAGGATTGG GGCGAACGGA CCTCGACCGT CGGCGACGAG
GTCGCCGCCG CCACCGCGGC GATGGCCAAG GTCCCCGAGG GCACGGTCAT GAGCATGAAG
CCGCCGGCGA TTGAATCGCT GGGCACCACC AACGGCTTCG CGATGCGCCT GGAAGACCGC
GCCAATCGCG ACCATCCCGC CTTGATGGCG GCCCAAGCCA GACTGCTTGA GCTGGCCGCG
CAAAGCAGGC TGGTCAGCGG CGTCTATCCT GAAGGCCTGC CGAACGGACC GAGCGTGCGG
CTGAAGATCG ACCGCCAGAA GGCCGAAGCC CTCGGCGTGC CTTTCACCAT GCTCAGCGAT
ACGCTGACCG CGGCGATGGG GTCGACCTAT GTGAACGACT TTCCGAATGC CGGACGACTG
CAGCAGGTGA TCGTGCAGGC CGACGCGCCG AACCGCATGC AGATCGACGA TGTTCTGAAG
CTCTACGTCC GCAACAATGC CGGCGGCATG GTGTCGTTGT CGGAGGTGGT CACCCCGGAG
TGGGGCGAGG AGCCGCTGCA ACTCGTGCGT TACAACGGCT ACCCCACCGC GCGCATTGCC
GGCAACGCCG CAGCAGGGGT CTCAAGCGGC GACGCCATGG CGGAGATGGA GCGGCTCGCC
GCGCAGCTGC CGGCCGGCTT CATGGTGGAA TGGACCGGTC AGTCGCTGCA GGAGAAGGAC
TCCGCGTCGC AGGCCCCGAT CCTGCTCGCG CTGTCGATGC TGGTGGTGTT TCTGGTGTTG
GCGGCGCTGT ATGAAAGCTG GTCGATCCCG CTTTCGGTGA TGCTGGTGGT GCCGCTCGGC
ATTCTCGGCG CCGTGCTCGC CGTGCAGATT CGCGGGCTGG AGAACGATGT GTTCTTCAAG
GTCGGACTGA TCACCATCAT CGGGCTGTCG GCCAAGAACG CGATCCTCAT CGTCGAATTC
GCCAGGAGCC TGCGTGCCGA GGGACGGGAA TTCGGCGATG CCGTCATCGA AGCCGCTCGG
CTGCGCTTGC GGCCGATCCT GATGACATCG TTTGCCTTCG CGCTCGGCGT CGTCCCGCTG
ATGGTGGCGC GGGGAGCCAG CGCCGAGACC CAGCACGCGA TCGGAACCGG GGTGTTCGGC
GGCATGCTAT CCGCCACCGT GCTGGCGGTG CTGTTCGTGC CGGTGTTCTA CGTCGTCGTG
ATGAAACGCT TCGGCTCGCG CAAGAGCAAC GGCGTGGCTC GCTCGACATA G
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| Protein sequence | MAQFFINRPV FAWVIAIFIA LIGVIAMTQL PVSRFPTIAP PSVSIYATYT GATPQTINDS
VVTLIERELS SVKNLLYFES TVDTSGSASI TATFKPGTAP DLAQVDVQNR LKAVEPRLPE
AVRRIGVTVE SAASDFLMIV TLNSPNGAYD ELALGDYMTR HIVQELKRVD GVGRVQTFGS
EKAMRIWVDP AKLVSYSLSL AQITAAIQAQ NAQIAPGRVG AEPTVLGQKV SIPLTVYGQL
QTPEEFRAIV LRAESDGSKL VLGDVARVEL GAQSLSFATL ENGKPATAAG IQLAPGANAV
RAAAAVYARL AELAPAMPEG MSYAVGFDTA PFVKISIEKV VHTLIEAMVL VVLVMLLFLQ
NIRYTLIPAI VAPIALLGTF AVMWIAGYSI NVLTMFGMVL AIGIIVDDAI VVVENVERIM
ASEGLPPKQA TQKAMKEITG AIIGITLVLS AVFIPMGLAS GSVGAIYRQF TLSMAVSILF
SAFLALSLTP ALCATLLKPI AAGHHEKKGF FGWFNRSFNR LTEGYAGFVA ALLRRTGRMM
VVYAVIVAAL AYCYTRLPSS FVPAEDQGNF MTSFTLPADA TAERTLSIVK QYDAYVATRA
AVASNTSIIG FGFSGSGSNA ALAFTSLKDW GERTSTVGDE VAAATAAMAK VPEGTVMSMK
PPAIESLGTT NGFAMRLEDR ANRDHPALMA AQARLLELAA QSRLVSGVYP EGLPNGPSVR
LKIDRQKAEA LGVPFTMLSD TLTAAMGSTY VNDFPNAGRL QQVIVQADAP NRMQIDDVLK
LYVRNNAGGM VSLSEVVTPE WGEEPLQLVR YNGYPTARIA GNAAAGVSSG DAMAEMERLA
AQLPAGFMVE WTGQSLQEKD SASQAPILLA LSMLVVFLVL AALYESWSIP LSVMLVVPLG
ILGAVLAVQI RGLENDVFFK VGLITIIGLS AKNAILIVEF ARSLRAEGRE FGDAVIEAAR
LRLRPILMTS FAFALGVVPL MVARGASAET QHAIGTGVFG GMLSATVLAV LFVPVFYVVV
MKRFGSRKSN GVARST
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