| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_2727 |
|---|
| Symbol | |
|---|
| ID | 3970280 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB18 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007925 |
|---|
| Strand | - |
|---|
| Start bp | 2960862 |
|---|
| End bp | 2961872 |
|---|
| Gene Length | 1011 bp |
|---|
| Protein Length | 336 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637925837 |
|---|
| Product | D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding |
|---|
| Protein accession | YP_532594 |
|---|
| Protein GI | 90424224 |
|---|
| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0111] Phosphoglycerate dehydrogenase and related dehydrogenases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.140552 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.0942361 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGATGT CACGGCTGCT GGCCATCTCC GCCGCAGCGT TTCAGATGAA CGGCAATGCG
ATGTCCAAAC GAATACTGCT TCCACAAGAA CTGATGCCCG AAGGGCGCGA GTATCTCGAA
AGCCGCGGCT ATCAATTGGT GACCGGGTCC GGAATGGATG AGGACCATGT CATCCACGAC
ATCCCGGAAT GCGACGGGAT CATCGTGCGC CTATCGCCGA TGTCAGCGCG CGTCTTTGAT
GCCGCCAAGA AACTGAAGGT CCTGGTGCGG CATGGCTCGG GCTACGACAC GGTCGATCTG
GCGGCCGCCA AGAAGCACGG CGTCACCGTC CTCAACGCGC CGCTGGCCAA CAGCACCTCT
GTCGCGGAAC TGGCGCTGTT CTACATGCTT CACTGCTCGA GAAATTTCCG CTTGGTGCAG
CAAACGATGT TGGTCGACTA CTACAAGGCC AAGCTGGATA CGCCGAAATC CGAGATCGCC
TGCAAGAAGC TCGGCCTGAT CGGCGTCGGC AACATCGGCT CGCGCGTCGC CAAGATGGCG
CGGGGTTTCG ACATGCAGGT GATCGGGTTC GATCCGTACA AGACGCAGGC GGATATGCCG
GAAGGCGTCG AGCTCACGCA AGACTTCGAT CGCATCTTCA CCGACTGCGA TTTCGTTTCG
CTGCACTGCC CGTCCACGCC CGAGACAAAG GGATTCGTTA ACGCCAGGCA GCTCGGGCTC
ATGAAAGGCA GTGCGGTCCT GATTAATACG GCGCGCGGCA CCATCGTGAA CGAGGACGAT
CTCTACGGCG CTCTCACCAA CCGCAAGATT GCCGGCGCCG CGCTCGATGT CCTGGCGGTC
GAGCCGTTCA AGCCCGACCA CAGGATGCTC AAGTTGGACA ACGTTGTCGT CGCCCCGCAC
ATCGGCGCCG CGACGCGGGA AGCGACGCAC CGTGCATCCC TGCATTCGGC GATCGGAATT
CACGAGGTGC TCTCGGGACA AAAGCCGTCC TGGCCCGTTC CGGGCTTCTG A
|
|---|
| Protein sequence | MTMSRLLAIS AAAFQMNGNA MSKRILLPQE LMPEGREYLE SRGYQLVTGS GMDEDHVIHD
IPECDGIIVR LSPMSARVFD AAKKLKVLVR HGSGYDTVDL AAAKKHGVTV LNAPLANSTS
VAELALFYML HCSRNFRLVQ QTMLVDYYKA KLDTPKSEIA CKKLGLIGVG NIGSRVAKMA
RGFDMQVIGF DPYKTQADMP EGVELTQDFD RIFTDCDFVS LHCPSTPETK GFVNARQLGL
MKGSAVLINT ARGTIVNEDD LYGALTNRKI AGAALDVLAV EPFKPDHRML KLDNVVVAPH
IGAATREATH RASLHSAIGI HEVLSGQKPS WPVPGF
|
|---|
| |