Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPC_2708 |
Symbol | |
ID | 3970300 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB18 |
Kingdom | Bacteria |
Replicon accession | NC_007925 |
Strand | - |
Start bp | 2935678 |
End bp | 2937714 |
Gene Length | 2037 bp |
Protein Length | 678 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 637925819 |
Product | Outer membrane autotransporter barrel |
Protein accession | YP_532576 |
Protein GI | 90424206 |
COG category | [S] Function unknown |
COG ID | [COG4625] Uncharacterized protein with a C-terminal OMP (outer membrane protein) domain |
TIGRFAM ID | [TIGR01414] outer membrane autotransporter barrel domain |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTTTGCGT TTGGTGCCGA TTGCTTGTCC GTTCGTTCGT CCTGTCGTGA CGGTCGATCC ATCCGTCGCG CCGTCACGCG CGCGCGCCGA TTGGGTTGGC CGCTGGCATG CTTGACCGCA CTCTGCGTCC CATCCGCGGC GTGGGCGCAG ACGCCCAACC TCGGCAGCGC CGCGAATTTT GCGGTGCTGG CGGGATCCGC GGTGAGCAAC ACCGGCCCGA CCACCCTGAT CGGCAGCCTC GGGCTCAGTC CCGGCAGCTC GGTGAGCGGA TTTCCGCCGG GCATGGTAAC CGCGCCGGGC GGTATCTACA TCGGCGACGC CATCGCGATC CAGGCTCAGA TCGATCTGGC CTCCGGCTAC AACGCGATCG CCAGCCGTCC GACCACCGCG GACCTGACCG GACAGAATCT GGGCGGACTC ACCCTCACCC CCGGCGTCTA TAACTTCGCC TCGACGGCGC AACTGACCGG CGCGCTGACG CTCAATGCGT TGGGCAATCC GAATGCGATC TTCATCTTCA ATATCGGCAG CTCGCTGACC ACCGGCAGCG CCGCCAGCGT CACGGTGATC GGCGGCGGTC TCGGCAGCAA CGTGTATTGG CGGGTCGGCA GCTCGGCGAC ACTCGGCACC ACCACGGCGT TCGTCGGAGA CATTCTGGCG CTCAGCAGCA TCACGCTGAA CACCGGCGCC AACATCAGCT GCGGCAGCGC GCTGGCGCGC AACGGCGCGG TGACGCTCGA TACCAACACC ATCGCGGCCC GGGCGTTTTC ATCCTGCGTC CAGGCCGCGC TGTTGCCGAC CGATTCAGGT GTGACCCCGG CGCAGTCCGG GATGGCCGGT CTGGTCAACA ATGCCTTCGC CAACGCCATC GGCAACGGCA ACAATCTGCC GCAAGGCTTC CTCAATCTGT CGGCTTTGAC GCCCGAGATG CTGGCGATCG TGCTGCGGCA GTTGTTCGGC GAAGGCGGCA CCGGGATCGC GCAGGGCGGC ATCCTGGCGA TGAACTCGTT CCTGTCGATG GTGCTCAATC CTTATGCCAA CGGCATGATG TCGGACGGCC GCGCCGGGTT CGGCCCGGCG CAGCCGGTGG TGCGGACGCT CGGCTATGCG CCCGACAGCC GGATGGCCAC CAAGGCGCCG GCCGCCGCGG CGATCGACCG CGGCCTGCTG GGAGGCTCGG ACCAACGCTG GGGCAGCTGG GGCGCCGTGT ATGGCGGCAA GACCGAGACC CGGGGCCTCA CCGCGCTGGA CACCAGCGAT CGTTCGAGCC GCGGCTTCGG CGTTTCCGCC GGGCTGGACT ATCGGTTGCT GCCCGACACC ATCGTCGGCG TCGCCGTCGG CGGCGGCACC ACCAACTACG CGCTGGGCAA CGGTCTCGGC AGCGGCCACA GCGACATGTT CCAGACCGCG CTGTACAGCT CCACCCGCAT CCACGCCGCC TATGTGTCCG CCGCGGTGGC CTATGCATGG CATGACGTGA CCACCGATCA ATTCCTCTCG GTCGCCACCG CCGATCACCT CACCGCGCAT TTCAACGCCA ACAATCTCGG CGCGCGGATC GAGGCGGGCT ATCGCTTCGC GGTGCCCGGC GTGTGGATGG TGCCGGAGTT CGGCATCACA CCTTACGGCG CGCTGCAGGC GCAGGCGTTC CGGACCCCGT CCTACGCCGA AAACATCAAT TCGGACTTCG CGCGCAGCTT CGCCGCGCGC ACCGAAACCG CGGTCCGCAC CGAACTCGGC GCCTGGTTCG ATCAGGCCAA CCTGCTGGAC GACGGCAATG TGCTGATCCT GCGCAGTCGC GCAGCCTGGG CGCACGACAG AACCTCGACG CCGACCATGA ATGCCGCGTT CCTGGCGCTG CCCGGCTCCA ACTTCACGGT GTACGGCGCG ACCCCGGCCG GCGATCTGCT GCTGGCCACG GTCGCTTCGG AATTGCGCTT CCGCAACGGC TTCTCGGTCG CGGCGCAATT GGACGGCGAG TTCGCCGAAC GCGCCACCCG ATACGGCGGC ACCGGACGGG TGCGCTACTC CTGGTAA
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Protein sequence | MFAFGADCLS VRSSCRDGRS IRRAVTRARR LGWPLACLTA LCVPSAAWAQ TPNLGSAANF AVLAGSAVSN TGPTTLIGSL GLSPGSSVSG FPPGMVTAPG GIYIGDAIAI QAQIDLASGY NAIASRPTTA DLTGQNLGGL TLTPGVYNFA STAQLTGALT LNALGNPNAI FIFNIGSSLT TGSAASVTVI GGGLGSNVYW RVGSSATLGT TTAFVGDILA LSSITLNTGA NISCGSALAR NGAVTLDTNT IAARAFSSCV QAALLPTDSG VTPAQSGMAG LVNNAFANAI GNGNNLPQGF LNLSALTPEM LAIVLRQLFG EGGTGIAQGG ILAMNSFLSM VLNPYANGMM SDGRAGFGPA QPVVRTLGYA PDSRMATKAP AAAAIDRGLL GGSDQRWGSW GAVYGGKTET RGLTALDTSD RSSRGFGVSA GLDYRLLPDT IVGVAVGGGT TNYALGNGLG SGHSDMFQTA LYSSTRIHAA YVSAAVAYAW HDVTTDQFLS VATADHLTAH FNANNLGARI EAGYRFAVPG VWMVPEFGIT PYGALQAQAF RTPSYAENIN SDFARSFAAR TETAVRTELG AWFDQANLLD DGNVLILRSR AAWAHDRTST PTMNAAFLAL PGSNFTVYGA TPAGDLLLAT VASELRFRNG FSVAAQLDGE FAERATRYGG TGRVRYSW
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