Gene RPC_2708 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPC_2708 
Symbol 
ID3970300 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB18 
KingdomBacteria 
Replicon accessionNC_007925 
Strand
Start bp2935678 
End bp2937714 
Gene Length2037 bp 
Protein Length678 aa 
Translation table11 
GC content68% 
IMG OID637925819 
ProductOuter membrane autotransporter barrel 
Protein accessionYP_532576 
Protein GI90424206 
COG category[S] Function unknown 
COG ID[COG4625] Uncharacterized protein with a C-terminal OMP (outer membrane protein) domain 
TIGRFAM ID[TIGR01414] outer membrane autotransporter barrel domain 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTTTGCGT TTGGTGCCGA TTGCTTGTCC GTTCGTTCGT CCTGTCGTGA CGGTCGATCC 
ATCCGTCGCG CCGTCACGCG CGCGCGCCGA TTGGGTTGGC CGCTGGCATG CTTGACCGCA
CTCTGCGTCC CATCCGCGGC GTGGGCGCAG ACGCCCAACC TCGGCAGCGC CGCGAATTTT
GCGGTGCTGG CGGGATCCGC GGTGAGCAAC ACCGGCCCGA CCACCCTGAT CGGCAGCCTC
GGGCTCAGTC CCGGCAGCTC GGTGAGCGGA TTTCCGCCGG GCATGGTAAC CGCGCCGGGC
GGTATCTACA TCGGCGACGC CATCGCGATC CAGGCTCAGA TCGATCTGGC CTCCGGCTAC
AACGCGATCG CCAGCCGTCC GACCACCGCG GACCTGACCG GACAGAATCT GGGCGGACTC
ACCCTCACCC CCGGCGTCTA TAACTTCGCC TCGACGGCGC AACTGACCGG CGCGCTGACG
CTCAATGCGT TGGGCAATCC GAATGCGATC TTCATCTTCA ATATCGGCAG CTCGCTGACC
ACCGGCAGCG CCGCCAGCGT CACGGTGATC GGCGGCGGTC TCGGCAGCAA CGTGTATTGG
CGGGTCGGCA GCTCGGCGAC ACTCGGCACC ACCACGGCGT TCGTCGGAGA CATTCTGGCG
CTCAGCAGCA TCACGCTGAA CACCGGCGCC AACATCAGCT GCGGCAGCGC GCTGGCGCGC
AACGGCGCGG TGACGCTCGA TACCAACACC ATCGCGGCCC GGGCGTTTTC ATCCTGCGTC
CAGGCCGCGC TGTTGCCGAC CGATTCAGGT GTGACCCCGG CGCAGTCCGG GATGGCCGGT
CTGGTCAACA ATGCCTTCGC CAACGCCATC GGCAACGGCA ACAATCTGCC GCAAGGCTTC
CTCAATCTGT CGGCTTTGAC GCCCGAGATG CTGGCGATCG TGCTGCGGCA GTTGTTCGGC
GAAGGCGGCA CCGGGATCGC GCAGGGCGGC ATCCTGGCGA TGAACTCGTT CCTGTCGATG
GTGCTCAATC CTTATGCCAA CGGCATGATG TCGGACGGCC GCGCCGGGTT CGGCCCGGCG
CAGCCGGTGG TGCGGACGCT CGGCTATGCG CCCGACAGCC GGATGGCCAC CAAGGCGCCG
GCCGCCGCGG CGATCGACCG CGGCCTGCTG GGAGGCTCGG ACCAACGCTG GGGCAGCTGG
GGCGCCGTGT ATGGCGGCAA GACCGAGACC CGGGGCCTCA CCGCGCTGGA CACCAGCGAT
CGTTCGAGCC GCGGCTTCGG CGTTTCCGCC GGGCTGGACT ATCGGTTGCT GCCCGACACC
ATCGTCGGCG TCGCCGTCGG CGGCGGCACC ACCAACTACG CGCTGGGCAA CGGTCTCGGC
AGCGGCCACA GCGACATGTT CCAGACCGCG CTGTACAGCT CCACCCGCAT CCACGCCGCC
TATGTGTCCG CCGCGGTGGC CTATGCATGG CATGACGTGA CCACCGATCA ATTCCTCTCG
GTCGCCACCG CCGATCACCT CACCGCGCAT TTCAACGCCA ACAATCTCGG CGCGCGGATC
GAGGCGGGCT ATCGCTTCGC GGTGCCCGGC GTGTGGATGG TGCCGGAGTT CGGCATCACA
CCTTACGGCG CGCTGCAGGC GCAGGCGTTC CGGACCCCGT CCTACGCCGA AAACATCAAT
TCGGACTTCG CGCGCAGCTT CGCCGCGCGC ACCGAAACCG CGGTCCGCAC CGAACTCGGC
GCCTGGTTCG ATCAGGCCAA CCTGCTGGAC GACGGCAATG TGCTGATCCT GCGCAGTCGC
GCAGCCTGGG CGCACGACAG AACCTCGACG CCGACCATGA ATGCCGCGTT CCTGGCGCTG
CCCGGCTCCA ACTTCACGGT GTACGGCGCG ACCCCGGCCG GCGATCTGCT GCTGGCCACG
GTCGCTTCGG AATTGCGCTT CCGCAACGGC TTCTCGGTCG CGGCGCAATT GGACGGCGAG
TTCGCCGAAC GCGCCACCCG ATACGGCGGC ACCGGACGGG TGCGCTACTC CTGGTAA
 
Protein sequence
MFAFGADCLS VRSSCRDGRS IRRAVTRARR LGWPLACLTA LCVPSAAWAQ TPNLGSAANF 
AVLAGSAVSN TGPTTLIGSL GLSPGSSVSG FPPGMVTAPG GIYIGDAIAI QAQIDLASGY
NAIASRPTTA DLTGQNLGGL TLTPGVYNFA STAQLTGALT LNALGNPNAI FIFNIGSSLT
TGSAASVTVI GGGLGSNVYW RVGSSATLGT TTAFVGDILA LSSITLNTGA NISCGSALAR
NGAVTLDTNT IAARAFSSCV QAALLPTDSG VTPAQSGMAG LVNNAFANAI GNGNNLPQGF
LNLSALTPEM LAIVLRQLFG EGGTGIAQGG ILAMNSFLSM VLNPYANGMM SDGRAGFGPA
QPVVRTLGYA PDSRMATKAP AAAAIDRGLL GGSDQRWGSW GAVYGGKTET RGLTALDTSD
RSSRGFGVSA GLDYRLLPDT IVGVAVGGGT TNYALGNGLG SGHSDMFQTA LYSSTRIHAA
YVSAAVAYAW HDVTTDQFLS VATADHLTAH FNANNLGARI EAGYRFAVPG VWMVPEFGIT
PYGALQAQAF RTPSYAENIN SDFARSFAAR TETAVRTELG AWFDQANLLD DGNVLILRSR
AAWAHDRTST PTMNAAFLAL PGSNFTVYGA TPAGDLLLAT VASELRFRNG FSVAAQLDGE
FAERATRYGG TGRVRYSW