| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_2661 |
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| Symbol | |
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| ID | 3970521 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB18 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007925 |
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| Strand | + |
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| Start bp | 2890033 |
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| End bp | 2891184 |
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| Gene Length | 1152 bp |
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| Protein Length | 383 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 637925772 |
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| Product | riboflavin biosynthesis protein RibD |
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| Protein accession | YP_532530 |
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| Protein GI | 90424160 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0117] Pyrimidine deaminase
[COG1985] Pyrimidine reductase, riboflavin biosynthesis |
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| TIGRFAM ID | [TIGR00227] riboflavin-specific deaminase C-terminal domain
[TIGR00326] riboflavin biosynthesis protein RibD |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.185989 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.868949 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCTTCC GCATCCTGGA AGATCAATAC GCCGACAAGA TCCATCAGGC GAAGGCCGCC
GACCTGCGCT TCATGCAGCT GGCGCTGTCG CTGGGGCGTC GCGGGCAGGG CCGCACCGCG
CCCAATCCGG CGGTCGGCGC GGTGATCGTC AAAGACGGCG TGATCGTCGG CCGCGGCTGG
ACCCAGCCCG GCGGACGGCC GCATGCCGAA ATCGAGGCGC TGAACCGCGC CGGCCTCGCC
GCGCGGGGGG CAACTCTCTA CGTCACGCTG GAACCGTGCT CGCATCACGG CAAGACGCCG
CCCTGCGCCG ACGCGGTGAT CGCCGCCGGC CTGGCCCGGG TGGTGTCGGC GATCGAAGAC
CCCAATCCGC AAGTGGCCGG GCAGGGCCAT GCCAGGCTGC GCGCCGCCGG CATCCGGGTC
GATGTCGGGC TCGGCGCCGC CGAGGCCGCG CACGACCACG CCGGGCATTT TCGCCGGGTG
CGCGACGGCC GGCCGCATGT GATCCTGAAG CTCGCGGTTT CCTCCGATGA CAAGATCGCC
GCCACGCCCG GCCAGCCGAC CGCGATCACC GGCGAGGCGG CGCGGGCGCG GGTGCATCTG
CTGCGCGCGC AATGCGACGC CATCCTGATC GGCATCCGCA CCGCGCTGGC CGACGACCCG
CTGTTGACCT GCCGGTTGCC CGGCATGGAG AAGCGCTCGC CGGTGCGGGT GGTGCTGGAC
CGCGCGCTGC GGCTGCCCGG CGACAGCCGC CTGGTGCATT CGGCGCGGAG CACGCCGCTT
TGGCTGCTAG CGTCTGAAAT CGCCGAAGCC GCGGCCGCCG CCAAGCTCGG CGCCGCCGGC
GCGCAGATCA TCCACGTCGC CGATTGCGAC GCCATGCCGG GGCTCGATCT GCCCGCGGTG
CTGCAGGCGC TGGCCGGCAA CGGGATCACG CGGCTTCTGG TCGAGGGCGG CGCCCGGGTC
GCTTCGTCGT TGGTCGCGGC CGATTTGGTC GACGAGGTCT GGTTGCTGCG CGGCGCAATG
ACGATCGGCG AGGGCGGCGT GGCCGCGCTC GACGGCCTGC CGCTCAGCGT CATCACCGCC
GCCGCCGCTT TCAAGATCCG CACCAGCGAA ACGCTGGGCC CCGATTCCCT CACCATCTAC
GAGCGCAGCT AA
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| Protein sequence | MIFRILEDQY ADKIHQAKAA DLRFMQLALS LGRRGQGRTA PNPAVGAVIV KDGVIVGRGW
TQPGGRPHAE IEALNRAGLA ARGATLYVTL EPCSHHGKTP PCADAVIAAG LARVVSAIED
PNPQVAGQGH ARLRAAGIRV DVGLGAAEAA HDHAGHFRRV RDGRPHVILK LAVSSDDKIA
ATPGQPTAIT GEAARARVHL LRAQCDAILI GIRTALADDP LLTCRLPGME KRSPVRVVLD
RALRLPGDSR LVHSARSTPL WLLASEIAEA AAAAKLGAAG AQIIHVADCD AMPGLDLPAV
LQALAGNGIT RLLVEGGARV ASSLVAADLV DEVWLLRGAM TIGEGGVAAL DGLPLSVITA
AAAFKIRTSE TLGPDSLTIY ERS
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