| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_2610 |
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| Symbol | |
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| ID | 3973289 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB18 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007925 |
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| Strand | + |
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| Start bp | 2840122 |
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| End bp | 2843640 |
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| Gene Length | 3519 bp |
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| Protein Length | 1172 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 637925721 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_532479 |
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| Protein GI | 90424109 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.776583 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAATCAC CGACCCGCTC GCCCGCGGAG CTGCTCGCCC CCGGACAGGC TCTGACCTTC
GCCAACGTCG CCGAGAGCGC CGAAGGGCTG ATCGTGTCGG ATCTGGCGCG CGCGGTCGCG
GCGCGGCCGA AGCCGCCGGC GGTGTCGCTC GCGGTGATCT GCCGCGACGG CCCGCGGATG
CAGCAGCTGG CGCGCTCGCT GGAATTCTTC GCGCCGGATC TTGCGGTGAT GCAATTCCCG
GCCTGGGATT GTCAGCCCTA TGACCGGGTA TCGCCGCACG GCGGCGTGCT GGCGCAGCGG
CTGACCACGC TGGCGCGGCT GTCGCGGCTG AAGGGCAGCG ACAAGCCGCT GATCGTGTTG
ACCACGGTCA ACGCCATCGT GCAGCGGGTG CCGGCGCGCG AAGTGATCGC CGCGCAGGCG
CTGTCGGTGG CGCCCGGCCA CGCGGTGTCG ATGGAGTCGA TCGTCGCCTG GCTCGAGCAC
AACGGCTACA ACCGTTCCTC GACGGTGCGC GAGCCCGGCG AATACGCGGT GCGCGGCGGC
ATCCTCGATC TGTTTCCGGC CGGCCTCGAC CAGCCGGTGC GATTCGACTT CTTCGGCGAC
ACGCTGGAAT CGATCCGCAC CTTCGACGCC GAGACCCAGC GCACGCTGCT CGACATGCGC
GCGCTCGATC TGGTGCCGAT CTCGGAATTC CAACTGGTCA CCGACACCAT CCGCAAATTC
CGCATGGGCT ATGTCGCCGA ATTCGGCGCG CCGCTGCGCG ACGATCAGCT CTACGAAGCG
GTCAGCGAAG GCCGCCGCTA TCCCGGCATG GAGCACTGGC TGCCCTTGTT CCAGGAGCGG
ATGGACACGT TGTTCGACTA TCTCGACCGC ACGCCGATCG CGATCGAACC GCAGGGCGAG
GATGCCGCGC GCGAACGCTT CAAGCAGATC GGCGACTACT ATCTGGCGCG GCGCGAGGCG
CGGGACATCC CCGGCGGCGG CGCGATCTAC AATCCGTTGC CGCCTGACCG GCTGTATCTG
GCCGAACCCG AATGGGAGAA GTGCCTGCAA GGCGTGGCGC TGGCGCGGCT GACGCCGTTC
GCGGTGCCGG CCGACGACGG CCACGTCATC GATGCCGCAG CAAGGGCCGG CCGCAACTTC
GCGCCGGAGC GCGCCGACGC CGCGGTCAAC GTGTTCGAAG CCGTGGTCGC GCATGTGCTG
GCGTTGCAGG GCCAGCGCAA GAAGGTGGTG GTAGCGCTGT GGAGCGAAGG CTCGCGCGAC
CGCATGGCGA GCATGCTGAG GGACCACAAG CTGCTCAACC TCACCTCGGT GAATTCCTGG
CGCACGGTGC AGGCGACGCC GCGCAACGAG GCGATGCTGG CGGTGGTCGG CATGGAAGCC
GGCTTCGAGA CCGACAGCGT CGCGGTGATC AGCGAGCAGG ACATTCTCGG CGACCGCCTG
GTGCGGCCGC GCAAGGCCAG CCGCAAGCTC GACAATTTCA TTTCCGAAGT GACGAGTCTC
GCCGCCGGCG ACCTCGTGGT CCATGTCGAG CACGGCATCG GTCGCTTCGT CGGGCTGCAG
ACGCTGGAGG TCGGCGGCGC GCCGCATGAC TGCCTCGAGC TGCACTACGC CGCCGATACC
AAGCTGTTTC TGCCGGTCGA AAATATCGAA CTGCTGTCGC GCTATGGCTC CGACCACGCC
CATGTGGAAT TGGATCGGCT CGGCGGTTCG GGTTGGCAGG CTCGCAAGGC CAAGCTGAAA
AACCGCATCC GCGAAATGGC CGGCGAGCTG ATCAAGATCG CCGCCGAACG GCATTTGCGC
GAAGCGCCGA AATTGGTCGT GCAGCCGCAT CTGTATGACG AGTTCTGCGC ACGCTTCCCT
TACGACGAGA CCGAGGATCA GCTCGGCGCG ATCCAGGCCT CGCTGCACGA TCTGGAAAGT
GGCAAGCCGA TGGACCGGCT GGTCTGCGGC GACGTCGGCT TCGGCAAGAC CGAGGTGGCG
CTGCGCGCCA CCTTTGCGGT GGCGATGGAA GGCAAGCAGG TCGCCGTGGT GGTGCCGACC
ACGCTGCTGG CGCGGCAACA CGCGCGCAAT TTCACCGAGC GTTTCCGCGG CTTTCCGGTC
AATGTCGGGC AGGCCTCGCG GCTGGTGCCG CCGAAAGAAC TCGCAAAGGT CAAGAAGGGC
ATCGCCGAAG GCGCCATCGA CATCGTGGTC GGCACCCACG CGCTGCTCGG CAAGTCGATC
AAGTTCAGGG ACCTCGGGCT GATCGTGGTC GACGAGGAAC AGCATTTCGG CGTCAGCCAC
AAGGAACGGC TGAAGCAGCT GCGCGCCGAG GTGCACGTGC TGACGCTGAG CGCCACGCCG
ATCCCGCGCA CGCTGCAGTT GGCGCTGACC GGGGTGCGCG ATCTGTCGAT CATCGCCTCG
CCGCCGGTCG ATCGTCTGGC GGTGCGCACC TTCGTCGCGC CGCACGATCC GTTGATGATC
CGCGAGGCGC TGCTGCGCGA GCGCTACCGC GGCGGCCAGG CGTTCTATGT CTGCCCGCGC
ATCGAAGACC TCGCCGGTGT GAAGGATTTC CTCGACAAGC ACGTCCCGGA GATGAAGGTC
GCGGTGGCCC ACGGCCAGAT GCCGCCGACG GTGATCGAGG ACATCATGTC GGCGTTCTAC
GACGGCAAAT ACGACATCCT GCTGTCGACC ACGATCGTCG AGAGTGGCCT CGACATCCCC
AACGCCAACA CGCTGATCGT GCACCGCGCC GACATGTTCG GCCTGGCGCA GCTCTATCAG
CTGCGCGGCC GGGTCGGGCG TTCCAAGCTG CGCGCCTATG CGTTGTTCAC GCTGCCGTCG
CAGCATCAGA TCACCGCGCA GGCGGAGCGC CGGCTCAAAG TGCTGCAATC GCTGGAGACG
CTCGGCGCCG GCTTCCAGCT CGCCTCGCAC GATCTCGACA TCCGCGGCGC CGGCAATCTC
TTGGGCGAAG AACAGTCCGG CCACATCAAG GAGGTCGGCT TCGAGCTCTA CCAATCGATG
CTGGAAGAGG CGATCGTCAA CCTCAAGGCC GGCGTGGTCG AGCCGGTCGC CGACCGCTGG
TCGCCGCAGA TCACCATCGG CATGCCGGTG CTGATCCCCG AAGAGTTCGT CGCCGACCTG
TCGGTGCGGC TGTCGCTGTA TCGCCGGCTC GCCGATCTCG ACACCGACGA GGAGATCGAC
GCCTTCGCCG CCGAACTACG CGACCGCTTT GGTCTATTGC CCGACGAGGT GCGCTATCTG
TTCAAGGTCG CCGCGATCAA GGCGTATTGC CGCCGGGCCA ATGTCGAGAA GGTCGATGCC
GGCCCGAAGG GCGTGGTGAT CTCGTTCCGC GACAACTCGT TCGCGCAGCC GGACCGGCTG
GTGTTCTTCA TCAAGCAGCA CGGCAAGGCC GCCAAGGTGC GCCCGGATAT GAAGGTGGTG
TTCCTGCAGG ACTGGGAAAC CCCGGAGGAG CGGCTGATCG GCACCACCGA AATCCTGCGC
CAGCTCGCCA ATTTGGCGGA AGACCGCAAG GCGGCGTAG
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| Protein sequence | MKSPTRSPAE LLAPGQALTF ANVAESAEGL IVSDLARAVA ARPKPPAVSL AVICRDGPRM
QQLARSLEFF APDLAVMQFP AWDCQPYDRV SPHGGVLAQR LTTLARLSRL KGSDKPLIVL
TTVNAIVQRV PAREVIAAQA LSVAPGHAVS MESIVAWLEH NGYNRSSTVR EPGEYAVRGG
ILDLFPAGLD QPVRFDFFGD TLESIRTFDA ETQRTLLDMR ALDLVPISEF QLVTDTIRKF
RMGYVAEFGA PLRDDQLYEA VSEGRRYPGM EHWLPLFQER MDTLFDYLDR TPIAIEPQGE
DAARERFKQI GDYYLARREA RDIPGGGAIY NPLPPDRLYL AEPEWEKCLQ GVALARLTPF
AVPADDGHVI DAAARAGRNF APERADAAVN VFEAVVAHVL ALQGQRKKVV VALWSEGSRD
RMASMLRDHK LLNLTSVNSW RTVQATPRNE AMLAVVGMEA GFETDSVAVI SEQDILGDRL
VRPRKASRKL DNFISEVTSL AAGDLVVHVE HGIGRFVGLQ TLEVGGAPHD CLELHYAADT
KLFLPVENIE LLSRYGSDHA HVELDRLGGS GWQARKAKLK NRIREMAGEL IKIAAERHLR
EAPKLVVQPH LYDEFCARFP YDETEDQLGA IQASLHDLES GKPMDRLVCG DVGFGKTEVA
LRATFAVAME GKQVAVVVPT TLLARQHARN FTERFRGFPV NVGQASRLVP PKELAKVKKG
IAEGAIDIVV GTHALLGKSI KFRDLGLIVV DEEQHFGVSH KERLKQLRAE VHVLTLSATP
IPRTLQLALT GVRDLSIIAS PPVDRLAVRT FVAPHDPLMI REALLRERYR GGQAFYVCPR
IEDLAGVKDF LDKHVPEMKV AVAHGQMPPT VIEDIMSAFY DGKYDILLST TIVESGLDIP
NANTLIVHRA DMFGLAQLYQ LRGRVGRSKL RAYALFTLPS QHQITAQAER RLKVLQSLET
LGAGFQLASH DLDIRGAGNL LGEEQSGHIK EVGFELYQSM LEEAIVNLKA GVVEPVADRW
SPQITIGMPV LIPEEFVADL SVRLSLYRRL ADLDTDEEID AFAAELRDRF GLLPDEVRYL
FKVAAIKAYC RRANVEKVDA GPKGVVISFR DNSFAQPDRL VFFIKQHGKA AKVRPDMKVV
FLQDWETPEE RLIGTTEILR QLANLAEDRK AA
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