Gene RPC_2592 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPC_2592 
Symboltgt 
ID3970700 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB18 
KingdomBacteria 
Replicon accessionNC_007925 
Strand
Start bp2819056 
End bp2820189 
Gene Length1134 bp 
Protein Length377 aa 
Translation table11 
GC content67% 
IMG OID637925702 
Productqueuine tRNA-ribosyltransferase 
Protein accessionYP_532461 
Protein GI90424091 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0343] Queuine/archaeosine tRNA-ribosyltransferase 
TIGRFAM ID[TIGR00430] tRNA-guanine transglycosylase, queuosine-34-forming
[TIGR00449] tRNA-guanine transglycosylases, various specificities 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00946662 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value0.321303 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACGCTCG CCAATCACTT CGAACTCATC GGCCAAAGCG ACGCGGCACG GCTCGGCCGG 
CTGACCACGC CGCATGGCGT GGTGCGTACG CCGGCCTTCA TGCCGGTCGG CACGCTCGGC
GCCATGAAGG GGCTGCATTG GCGCGAGGTG CGTGACGCCG GCGCCGACAT CGTGCTCGGC
AACACCTATC ATTTGATGCT GCGGCCCGGC GCCGAGCGGA TCGCAGCGCT CGGCGGCCTG
CAGAAATTCA CCACCTGGAA CGGGCCGATG CTGACCGATT CCGGCGGCTT CCAGGTGATG
TCGCTGGCGC AGCTGCGCAA GGTCACCGAG AAGGCGGTGA ATTTTCGCTC GCATATCGAT
GGCGCGGCGA TCGAGCTATC GCCGGAGCGT GCCATCGAAG TGCAGCTGTT GCTCGGCTCC
GACATCGCGA TGCAGCTCGA CGAATGCGTG CGGCTGCCGG CGGAGCGCGA CGACATCGAC
CGCGCGATGC GGTTGTCGCT GCGCTGGGCG GAACGCTGCA AGCGCGCCTT CGAGCACGCG
CCGCAGGGTC ACATGCTGTT CGGTATCGTG CAGGGCGGCG ACGTGCCGGA GCTACGCCAG
CAAAGCGCGC GCGGGCTGAT CGAGATCGGG TTCCACGGCT ATGCGATCGG CGGGCTGGCG
GTCGGCGAGC CGCAACAAGT GATGCTGGCG ATGATCGAGG AGACCGCGCC GGTGCTGCCG
CAGGACCGGC CGCGCTATCT GATGGGCGTC GGCACGCCGG AGGATATTCT GGAGGCGGTG
GCGCGCGGCA TCGACATGTT CGATTGCGTG ATGCCGACAA GGAACGGACG CCACGGTGTG
GCGTTTACCC GCTTTGGTTC GGTGAACCTG CGCAACGCGC GCCATGCCGA CGACCCGCGT
CCGCTCGACG CGGAGAGTAA TTGGCCGTCG ACGCGCAATT GCTCGCGGGC TTATCTGCAT
CATCTGGTGA AGTCGGGCGA GACGCTCGGC GCCATGCTGT TGTCGGAGAT CAACATCGCT
TACTACCAGA GCCTGATGAG CGGCATCCGC GAGGCGATCG GCAACGGCAC GTTCGAGGCG
TTTCGGCAGC AGACCCGCGA AGACTGGGCG CGCGGCGATA TCCCGGCGCT GTAG
 
Protein sequence
MTLANHFELI GQSDAARLGR LTTPHGVVRT PAFMPVGTLG AMKGLHWREV RDAGADIVLG 
NTYHLMLRPG AERIAALGGL QKFTTWNGPM LTDSGGFQVM SLAQLRKVTE KAVNFRSHID
GAAIELSPER AIEVQLLLGS DIAMQLDECV RLPAERDDID RAMRLSLRWA ERCKRAFEHA
PQGHMLFGIV QGGDVPELRQ QSARGLIEIG FHGYAIGGLA VGEPQQVMLA MIEETAPVLP
QDRPRYLMGV GTPEDILEAV ARGIDMFDCV MPTRNGRHGV AFTRFGSVNL RNARHADDPR
PLDAESNWPS TRNCSRAYLH HLVKSGETLG AMLLSEINIA YYQSLMSGIR EAIGNGTFEA
FRQQTREDWA RGDIPAL