| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_2586 |
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| Symbol | |
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| ID | 3970925 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB18 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007925 |
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| Strand | + |
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| Start bp | 2811851 |
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| End bp | 2815315 |
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| Gene Length | 3465 bp |
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| Protein Length | 1154 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 637925696 |
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| Product | Outer membrane autotransporter barrel |
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| Protein accession | YP_532455 |
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| Protein GI | 90424085 |
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| COG category | [S] Function unknown |
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| COG ID | [COG4625] Uncharacterized protein with a C-terminal OMP (outer membrane protein) domain |
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| TIGRFAM ID | [TIGR01414] outer membrane autotransporter barrel domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.501537 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.680105 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGGGGCTG GGTTCTTTCG TGATGTCTCG AAGCTGTTGT TGTGCACGAC GTTTCTCGTT
GCCGCTCCGG TTTCGGCTGT GCTGCAGGCG GCGGAAATCC CCGCCAAGCC GAACTCGGCT
GCACGCTCCG TATTGCCCTC GGACTTGAAA GAGCGGCTCG CCCAAGCACT GCGCCAGGGC
GAACGCGAAC TGATCGCCCA GGTCTATGAC AGCACGTATC GCGATCCGCG GCTGCGGGAC
GCCGTCGTTC AGCACGCGGG GAGCCTGTCG TCGCGCGCCT TGCGCGACGT CACCACGGCC
GCCGATCTCG GCGTGCTGAC GTCGGGTCAG CCGATGATGC TGGCGCCGAA TGCCGCGCCG
GCGACGAGAA CCGCGGCCGT TTCGGGGCTC AGCGCGACCT CCTATCAAAA CGTCGCGATG
GCCAGCAACA CCTCGCCGAA CCTGCCGAAC CCGCTGCCGG ACCCGGTGTT GCAGACCTGG
AATCTCGATC TGATCCACGC CCAGGCAGCC TATAGTCGCA ACTTCACCGG CGCCGGCGTC
GTCGTCACCG TCGCCGACAC CGGCTTCGAT CTGACCAATG CGGCGCTGTC GAACAAGCTG
TTGACCAATC TCGGCAAGAA CTACGTGGTC CGCGACGGCG AGACCTACGA CCCCAACGAT
CTGACGCCGC AGAGCGCGCT GAAGAACGAC ATCCACGGCT CGCACGTCTC CGGCCTCGTG
GCGGCGGAAA AGTTCGACAA CGTCGATGCC CACGGCGTGG CCTATGACGC GAAGGTCATT
CCGCTGCGCG CGATCGCCGA GGAGGGGTAT TCCACTGTCG GCGGCGACTC CTCTGTATTG
GCGCTGAACT ACTTCGCCGG CCTGTCCGGC ACCATGGTCT ACAACGCCAG CTACGGCCCG
AATTTCGACG CCTACACCGG GCTGAAGAAA TGGACCATCA ACGACGTCAC CGACGAGGGC
AACGCGGCGA TGAACGTGCT GCAGGCCGGC AAGATCATCG TCGCCGCCAA CGGCAACGAC
CGCGGCAAGA ATCCCGTCGC CGCCAACAAT CCCTCGGGCC TCGCGCTGTT GCCGTTCCTC
AACCCGGCGC ATGCCGGGCT CGGCGTCTAC GACGATCAGG GCCAGCTGTT CGACGGCACG
CCGCTGCAAA GCCAGAACGG GCAGATCGTC GCCGTGATGT CGGTCGGCAT CACCAAGGCG
GCGGCCTGGT ACTCCAACTA TTGCGGCGTC ACCGCGAGCT GGTGCGTGGC GGCGCCGGGC
GGCGACGACA AGACCAAGGC GCCGGTCTAT TCGACGATTC CGCAGAACAC TTACGGCTTC
GCGCAGGGCA CCTCGATGGC GGCGCCGACC GTCTCCGGCG CGATCGCCGT GCTGATCCAG
GCCAATCCGA ACTACAATGC GCAGGATCTC GCGCATCTGC TGTTCTCGAC GACCGAGGAT
CTCGGCGCGG CCGGCGTCGA CGCCGTGTTC GGTTACGGCC TGATCCGGCT CGATCGCGCC
ACCGACGGCC CGACCACGCT GGCCGCCAAT GCCATCGTCT CGGTCGCCGA CAATCAAACC
GCGTATTGGA GTCAGTTGCT CACCACCCAG GGCGACCTCG CCAACACCGG CGCGGGCATC
CTGACGATCT CCGGACGCAC CAATGCCGGC GGCAACGTGC TGGCGCAACT CGGCACGCTC
GCGGTCGACG GCACGCTCAC GGTGGCTTCG GGTAAGAAGC TCGAGGTGGC GCAGCCGGCC
ACGCTGGCGG GTTTTGGCAC CGTGGTCGGC AACACGGTCG TCGCCGGCAC GCTGTCGCCC
GGCAAGATGG CCAATGTCGG CGATTTCTTC TCGAACAATG TGGTCCCGGC CGGCACCGTG
CTGAACGGCA ACTCGGTCGG CACGCTGACC TTCAACGGCA ATGTCACGTT GACCTCGACG
GCGAATACCA GGATCGACGT CGACGGCTCG CTGATCGTTC CAGGCGGCCC CGGCACCTAT
GACAAGATCT ACGTCACCGG CGCTGGCAAC GTGTTCTATG CCGCCGGCAC GCTGACGCCG
GTGCTGCGCG GCAGCGTCGG CACCGTCAGC AACTACACGC CGCCGATCGG CAGCGAATAC
GCCTTCGTGC AGGCGCAGAA CGGCGCCTCG ACCGCGGGCG CGTTCTCGAC GCTGGTGCAG
CCGAGCTCCG GACTGCCGGC CAACGGCCGC TTCGACCTGA TTTACAATTC GACCTCGATC
GCCCTGGTGG TGACGCCGGC AAGCTACGGC GCGCTGGCGA GCACCGACAA GCTCGGCGCC
TCGCAGCGGT CGGTCGCCAA AATTCTCGAC GGCGAACGCG CCGCCTCCGG CACCATGCCG
CAGGCCGACG GAAAGGCGCT GTACGACGCG CTGTACAAGC TCGACACCGT CGCGGAATTG
GACAAGGCGC TGACCCAATT GGGCGGCCCC GGTCAGCCGG CGATCGCCAG CGCGCCGTTG
CAGGCGTTCT CCGGCTTCCT GGGCTCGATC GGCGATCGTC AGGACGCCCT GGCCGCGGGC
GGCGAGCAGG GCCACACCGG CACCGCGCAA GCCTTCGAGA TGTCCTATGC CGGTCGCAAC
ACCATGACGG CCGGGACCAA TTCGGCGGTC AACGCATTGG CCAGCATCGC CCCGGCGCAG
CGCGTCCAGG ACGGCTGGTC GCTGTGGGGG CAAGGCTTCG GCCGCAGCAG CCGGATCGGC
GACTCTGGCG ATCTGGCCGG CTCCAAGGCG GTCAGCGGCG GCTTCACGCT CGGCGCCGAC
CGCTGGTTCT CCAACAATCT GCTTGCCGGT GCTGCGTTCG GCTACGCCCG GACCACGGCC
ACCAGCACCG ACATTCGCGG CACGTCGGAT ACTTACGCCG GCGCCGCCTA TGCGAGCTGG
ACGCCGGGCG CCGCGGTGGT CGACCTGCGG GTCGCCGCCG GTCCGAGCCA GAGCTCGACC
ACCCGCCAGA TCCTGCTGGC GCCTTCAGGC CTGCAAGGCA ACGCCAACGG CATCGGCGTC
GGCACCACGC TGGAGGCCGG CTACCGCTTT GCGCTGACGC CGGATCTGAC CGTGAAGCCG
TTTGCCGGCC TGAGCTGGCA GGGCTTTCGC CGCGACGGCT ACAGCGAAAG CCAGCTGCCG
ATCGGTCTGG TCTATGCCGC ACAGACCTAT GAGAAGCTGA CCAGCACAGC GGGCGCCGCG
TTCAGCGCGC GGCTGCGCAC GCTCGACGGC ACCACCTTGA TGCCGGAGCT GAAGCTCGGC
TGGGGCTATG ACCTGCGCGA CACCACGCTG GTCAGCCAGG CGGCGCTGCT CGACGAAGCC
TTCCTGGTCG ACGCCGCCAA GCCCGGCCGC AACGCCGCGC TGGTCGGCGC CAAGCTGTCC
GGCTGGCGCA CCGAATCGTT CCGGCTGTTC GCCGCCTACA ACGGCGAATT CCGCAGCAAC
GCCACCAGCC ATCAGATCTC CGCCGGCGCG CGGATGAATT GGTGA
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| Protein sequence | MGAGFFRDVS KLLLCTTFLV AAPVSAVLQA AEIPAKPNSA ARSVLPSDLK ERLAQALRQG
ERELIAQVYD STYRDPRLRD AVVQHAGSLS SRALRDVTTA ADLGVLTSGQ PMMLAPNAAP
ATRTAAVSGL SATSYQNVAM ASNTSPNLPN PLPDPVLQTW NLDLIHAQAA YSRNFTGAGV
VVTVADTGFD LTNAALSNKL LTNLGKNYVV RDGETYDPND LTPQSALKND IHGSHVSGLV
AAEKFDNVDA HGVAYDAKVI PLRAIAEEGY STVGGDSSVL ALNYFAGLSG TMVYNASYGP
NFDAYTGLKK WTINDVTDEG NAAMNVLQAG KIIVAANGND RGKNPVAANN PSGLALLPFL
NPAHAGLGVY DDQGQLFDGT PLQSQNGQIV AVMSVGITKA AAWYSNYCGV TASWCVAAPG
GDDKTKAPVY STIPQNTYGF AQGTSMAAPT VSGAIAVLIQ ANPNYNAQDL AHLLFSTTED
LGAAGVDAVF GYGLIRLDRA TDGPTTLAAN AIVSVADNQT AYWSQLLTTQ GDLANTGAGI
LTISGRTNAG GNVLAQLGTL AVDGTLTVAS GKKLEVAQPA TLAGFGTVVG NTVVAGTLSP
GKMANVGDFF SNNVVPAGTV LNGNSVGTLT FNGNVTLTST ANTRIDVDGS LIVPGGPGTY
DKIYVTGAGN VFYAAGTLTP VLRGSVGTVS NYTPPIGSEY AFVQAQNGAS TAGAFSTLVQ
PSSGLPANGR FDLIYNSTSI ALVVTPASYG ALASTDKLGA SQRSVAKILD GERAASGTMP
QADGKALYDA LYKLDTVAEL DKALTQLGGP GQPAIASAPL QAFSGFLGSI GDRQDALAAG
GEQGHTGTAQ AFEMSYAGRN TMTAGTNSAV NALASIAPAQ RVQDGWSLWG QGFGRSSRIG
DSGDLAGSKA VSGGFTLGAD RWFSNNLLAG AAFGYARTTA TSTDIRGTSD TYAGAAYASW
TPGAAVVDLR VAAGPSQSST TRQILLAPSG LQGNANGIGV GTTLEAGYRF ALTPDLTVKP
FAGLSWQGFR RDGYSESQLP IGLVYAAQTY EKLTSTAGAA FSARLRTLDG TTLMPELKLG
WGYDLRDTTL VSQAALLDEA FLVDAAKPGR NAALVGAKLS GWRTESFRLF AAYNGEFRSN
ATSHQISAGA RMNW
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