| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_2559 |
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| Symbol | |
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| ID | 3970933 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB18 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007925 |
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| Strand | + |
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| Start bp | 2776376 |
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| End bp | 2779504 |
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| Gene Length | 3129 bp |
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| Protein Length | 1042 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 637925667 |
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| Product | acriflavin resistance protein |
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| Protein accession | YP_532428 |
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| Protein GI | 90424058 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.0108247 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCGTCT CGGAGCCGTT CATCCGCCGT CCGATCGCCA CCTCGTTGTT GGGGGTGGCG
CTGCTGCTCG GCGGCTTGCT GGGCTATCTG GCGCTGCCGG TGTCGGCATT GCCGCAGGTC
GATTTCCCGA CCGTGCAGGT CACCACGCAA TTGCCGGGCG CGAGCCCCGA CGTGATCGCC
TCGCTGATCA CCGCGCCGCT GGAACGCCAG CTCGGCCAGA TCCCGTCGCT GTCGGCGATG
ACCTCGACGA GTTCGTTCGG CGTCAGCCAG GTGTCGCTGC AGTTCGACCT CAACCGCGAT
ATCGATGGTG CTACGCAAGA CGTGCAGGCG GCGATCAACG CCGCAGCCGG CGTGCTGCCG
AAGAACCTGC CGTATCCGCC GACCTACGCC AAAGTGAATC CCGCCGACGC CGCGGTGCTG
ACGCTGGCGC TCACCTCCGA GACCAGTTCG ATGCGGGCGA TGAGCGACAT TGCCGACACG
CTGCTGGCGC AGCGGCTCAG CCAAATCTCC GGCGTCGGCC GCGTCACCGT GCTCGGCGGG
CTGAAGCCCG CTGTGCGGGT GCAGGCCGAT CTGGCGCGGC TCGCCGCCTA CGGCATCGCG
ATGGAAGACC TTCGCACCGC GATTGCGGGC GCCAACGTCT CCGGGCCGAA GGGCTCGCTC
GACGGCGCGC AGCAGGCCTA CACCATCGCC GCCAACGACC AGATCGCCGC CGCCGACGCC
TACCGGCCGA TCATCATCGC CTACCGCAAC GGCTCGCCGG TGACGATCGG CGACGTCGCC
TCGATCGTCG ATGGGCTGGA GAACGACCGC ACCGGCGGCT GGTTCAACGG CACCCCCGCG
GTGATCCTCG ACATCCAGCG CCAGCCCGGC GCCAATGTCA TCGAGGTGGT GCGGCAGATC
CGCGAGGAGA TCCCCAAGGT GCAGCGGGCG ATCCCGGCCG GGGTCAAGCT GACCGTGGTG
TCGGACCGCA CCGTCACCAT CCGCGCCTCG GTGCACGACG TGCAGTTCAC GCTGCTGCTC
AGCGTGATCC TGGTGACGCT GGTGGTGCTG TTGTTCCTGC GCTCAATGCG CGCCACCATC
ATCGCTGGCG TAGCGCTGCC GCTGTCGCTG ATCACCTCGT TCGGCGTGAT GTATTTCGCC
GGCTTCAGCC TCGACAATCT GTCGCTGATG GCGCTGACCA TCGGCACCGG CTTCGTGGTC
GACGACGCCA TCGTGATGAT CGAGAACATC GTCCGCCACA TGGAAGACGG CGAAACCCCG
ATGCAGGCGG CGCTCGACGG CGCCAGCGAG ATCGGCTTCA CGGTGATTTC GCTCACCGTG
TCGCTGATCG CGGTGTTCAT CCCGCTATTG TTCATGTCCG GGCTGGTCGG CCGCATGTTC
CGCGAATTCG CGCTGACCCT GACCATCGCG GTGGTGACCT CCGCGGTGGT GTCGCTGACG
CTGACGCCGA TGATGTGCTC GCGGCTGTTG AAGCATCCCG GCGAGGAGCG GCAGATCCCC
GGGCTCGCCA CCATCTCGGG CTGGATCGAC CGCTCCGCCG AGGCCTATCA CCGCTCGCTG
TTGTGGGTGC TGCAGCGGCA GCGCGCCACG CTGGTTTTGA CCTTCGTCAC CGTGGCGGCG
ACGCTGGCGC TTTATGTGAT CGCGCCGAAG GGCTTTTTGC CTTTGCAGGA CACCGCCTCG
ATCACCGCGG TGACCGAAGC CGGACCCGAC GTGTCGTTCG CCGAGATGCA GGCGCGGCAG
GCGGCGACCG CCGACGCCAT CAAGGCCGAT CCCGACGTCA CCGGCGTGGT CTCGGTGATC
GGCGCGGGCT CGGTCAATCC GACCACCAAT GTCGGCCGCC TGGTGATGAA CCTGAAGCCG
CGCGGCGAAC GCAAGGCTGA CGTCGCGCAG GTGATCGAGC GGCTCAAGCA ACGCGTCGCC
GGCATCCCCG GCATGACGGT GTATTTCCAG GCGGTGCAGG ACGTCCAGAT TTCCACGCAG
GCCAGCCGCT CGCAATATCA GTACACCTTG ACCGGCACCG ACGCCGCCGC GGTGTCGCTG
TGGTCGAACA AACTGGTCGC CGAAATGCGC CGCGATCCCT TGTTCCGCGA CGTGTCGTCG
GAGGCCCAGG AAGGCGGCTT GCGCGCCGCG CTTGATATCA ACCGGCAGCG CGCCGGCCAG
CTCGGCGTCA GCATCCAGGC GATCAACGAC ACCTTGAACG ACGCGTTTGC GCAGCGGCAG
ATTTCCACCA TCTACGGCCA GGCCAATCAG TACCGCGTGG TGCTGGAGGC GATGCCGCAG
TATCAGCGCG ATCCCTCGAT CCTGTCCAAG CTCTACGTGC CCGGCACCGG CGGCGCTCAG
GTGCCGATCT CGGCGGTGGC GGAGATGACG CGCACCACCG CGCCCTTGGC GATCTCGCAT
CAGGCGCAGT TTCCGGCGGT GTCGCTCAGC TTCAACCTGG CGCCGGGCGA AGCGCTCGGC
GACGCGGTCG ACGCGGTGAA GAGCATCGAG ACACGGATCG GCATGCCGGG CTCGATCGTC
GGGCTGTATT CCGGCGACGC CGCGGAGTTC TCCAAGTCGC TGGCCGGGCA GCCCTGGCTG
ATCCTCGCCG CATTGGTGAC GATCTACATC GTGCTCGGCG TGCTGTACGA GAGCTACATC
CACCCGATCA CCATTCTGTC GACGCTGCCC TCGGCCGGCG TCGGCGCGAT CCTGGCCTTG
ATGCTGTTCG GACAGGATCT CTCGGTGATC GGGCTGATCG GCATCATCCT GCTGATGGGC
ATCGTCAAGA AGAACGCCAT CATGATGATC GACTTCGCGC TGGAGGCGGA GCGGCACAAG
GGGCTGTCGT CCTACGACGC GATCGTGCAG GCCTGCCTGC TGCGCTTCCG GCCGATCATG
ATGACGACGC TGGCGGCGCT GTTCGGCGCG CTGCCGCTGG CGATCGAAAG CGGCACCGGC
GCCGAATTGC GGTTTCCGCT CGGCGTCTCG ATCGTCGGCG GCCTGCTGCT CAGCCAGCTG
CTGACGCTCT ACACCACGCC GGTGATTTAT CTCGCGCTCG ATCGGCTCAA CCGCCGCATC
GAAGGCGCGC TGCCGCCGGC GCCGGCGTCA CCTCCGCCGG TCGCCCGAGC TGCCGGGGAG
GCGCCGTAG
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| Protein sequence | MSVSEPFIRR PIATSLLGVA LLLGGLLGYL ALPVSALPQV DFPTVQVTTQ LPGASPDVIA
SLITAPLERQ LGQIPSLSAM TSTSSFGVSQ VSLQFDLNRD IDGATQDVQA AINAAAGVLP
KNLPYPPTYA KVNPADAAVL TLALTSETSS MRAMSDIADT LLAQRLSQIS GVGRVTVLGG
LKPAVRVQAD LARLAAYGIA MEDLRTAIAG ANVSGPKGSL DGAQQAYTIA ANDQIAAADA
YRPIIIAYRN GSPVTIGDVA SIVDGLENDR TGGWFNGTPA VILDIQRQPG ANVIEVVRQI
REEIPKVQRA IPAGVKLTVV SDRTVTIRAS VHDVQFTLLL SVILVTLVVL LFLRSMRATI
IAGVALPLSL ITSFGVMYFA GFSLDNLSLM ALTIGTGFVV DDAIVMIENI VRHMEDGETP
MQAALDGASE IGFTVISLTV SLIAVFIPLL FMSGLVGRMF REFALTLTIA VVTSAVVSLT
LTPMMCSRLL KHPGEERQIP GLATISGWID RSAEAYHRSL LWVLQRQRAT LVLTFVTVAA
TLALYVIAPK GFLPLQDTAS ITAVTEAGPD VSFAEMQARQ AATADAIKAD PDVTGVVSVI
GAGSVNPTTN VGRLVMNLKP RGERKADVAQ VIERLKQRVA GIPGMTVYFQ AVQDVQISTQ
ASRSQYQYTL TGTDAAAVSL WSNKLVAEMR RDPLFRDVSS EAQEGGLRAA LDINRQRAGQ
LGVSIQAIND TLNDAFAQRQ ISTIYGQANQ YRVVLEAMPQ YQRDPSILSK LYVPGTGGAQ
VPISAVAEMT RTTAPLAISH QAQFPAVSLS FNLAPGEALG DAVDAVKSIE TRIGMPGSIV
GLYSGDAAEF SKSLAGQPWL ILAALVTIYI VLGVLYESYI HPITILSTLP SAGVGAILAL
MLFGQDLSVI GLIGIILLMG IVKKNAIMMI DFALEAERHK GLSSYDAIVQ ACLLRFRPIM
MTTLAALFGA LPLAIESGTG AELRFPLGVS IVGGLLLSQL LTLYTTPVIY LALDRLNRRI
EGALPPAPAS PPPVARAAGE AP
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