| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_2557 |
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| Symbol | |
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| ID | 3970931 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB18 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007925 |
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| Strand | + |
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| Start bp | 2773381 |
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| End bp | 2774835 |
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| Gene Length | 1455 bp |
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| Protein Length | 484 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 637925665 |
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| Product | RND efflux system, outer membrane lipoprotein, NodT |
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| Protein accession | YP_532426 |
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| Protein GI | 90424056 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.034745 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.935873 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCGGGG CTGCTTCCTT GATTCGACGG CTTGCCGGGA CGGCGGCCAC GCTGGCCTTG
GCCGCGACCG TCGGCGGCTG CATCCTGACC CAGGACCTGC CGGATCCCGC GCTGGAGATT
CCAACCGGTT ATAAGGCCGC GCGCGCCACC ACGGTGGAGG CTGTGCCGGC GCTCGACTGG
TGGCGCGGCT TCCGCTCCAC CGAGCTGACC CAGTTGATGG AGGAGGCGCA GACCGTCAAC
CTCGACATTG CCGCGGCCAC GGCGCGAATC ATCCAGGCCG ACGCCCAGGC AAGGATCACC
GGCACGGCGT TGCTCCCCAG CCTCACCGCC GGCGGCAGCG CGACGCGCTC GAAGAGTTCG
ACCGCGAGCA GCAGCGGGAC CGGCGTCGGT CTCGGCGGCC GCGAGATCAC CACCTATTCG
TCTTCGCTCA GTGCGTCGTA TGAGATCGAT TTCTGGAGCA AGAATCGCGA CGCCACGCTC
GCCGCCGAAG AAATCGCCAA CGCCAACCGG TTCGACCGCG ACGTGGTCGC GCTGACCACC
GCCGCCGGCG TCGCTAACGC GTATTTCCAG GTGCTGGCAT CGCAGGACCG GATCCGCACC
GCCGAACGCA ACATCGCCTC CGCGCAGCGC ATCCTCGACG CCATCAAGCT GCGGCTCAGC
GTCGGCACCG GCAGCGATCT CGACGTCGCC CAGCAGGAGA GCGTGCTCGC CAATCAGCGC
GCCGCGGTGC CGCCGCTGCG GCTGACGCTG GCGCAGAACG TCAACGCGCT GGCGACCTTG
GTGGCGCGGC CGCCGGAGGC GGTGCGGGTC GGCGGCGGTT CGCTCGACCG TATCGCCGCG
CCGCGGGTGA CGCCGGGGCT GCCGTCGGAA TTGCTGACGC AACGCCCCGA CATCCGCCGC
CAGGAAGCCC AGCTCGCCTC CGCCACCGCC AATGTCGGCA GCGCGCGGGC GCAGTTTTTT
CCAAGCATTC AACTGACCGG GCAGGGCGGC TATCAGAGCG CGGCGCTGGC CTCGTTGTTC
ACCCCGCATG CGGCGTTTTA CAACGTCGCC GCGGGACTGA CCCAGCCGAT TTTCGACGGC
GGCCGAATCC TCGCCAATTT CGAATATAAT CAGGCGCGGC AGGACGAATT GCTGCAGACC
TATCGCAAGA CCGTGGTGTC GGCGTTCGCC GACGTTGACA ACGCGCTGGA ATCGATCCGG
CAGAACACCG AGCGGCTGCG GCTGCAACGG GTGGTGTTGG AATCCTCGCG CCGCGCCTTC
AATCTCGCCG AACAGCAGTT GCGCGCCGGC ACCGCCGACA TCGTCACCGT GCTCAACACC
CAATTGACGC TGTTTCAGGC CGAAGACGCG CTGTCGCAGG CGCAATTGGC GCGGCTTTTG
GCGATCGTCA GCCTGTATCA GGCGTTGGGC GGCGGCTGGC AGCCGCGGCT GGAGAGGCCG
GTCAATGCTC TTTAA
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| Protein sequence | MTGAASLIRR LAGTAATLAL AATVGGCILT QDLPDPALEI PTGYKAARAT TVEAVPALDW
WRGFRSTELT QLMEEAQTVN LDIAAATARI IQADAQARIT GTALLPSLTA GGSATRSKSS
TASSSGTGVG LGGREITTYS SSLSASYEID FWSKNRDATL AAEEIANANR FDRDVVALTT
AAGVANAYFQ VLASQDRIRT AERNIASAQR ILDAIKLRLS VGTGSDLDVA QQESVLANQR
AAVPPLRLTL AQNVNALATL VARPPEAVRV GGGSLDRIAA PRVTPGLPSE LLTQRPDIRR
QEAQLASATA NVGSARAQFF PSIQLTGQGG YQSAALASLF TPHAAFYNVA AGLTQPIFDG
GRILANFEYN QARQDELLQT YRKTVVSAFA DVDNALESIR QNTERLRLQR VVLESSRRAF
NLAEQQLRAG TADIVTVLNT QLTLFQAEDA LSQAQLARLL AIVSLYQALG GGWQPRLERP
VNAL
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